hkunerth

Genetics & Bioinformatics

Minnesota Department of HealthSt. Paul, MN

Pinned Repositories

docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:HTML0 0 00
fieldbioinformatics
The ARTIC field bioinformatics pipeline
Language:Python0 0 00
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow0 0 00
NanoCLUST
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
Language:Nextflow0 0 00
viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
Language:Nextflow0 0 00
viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
Language:Nextflow122 106 164110
nf-flu
Influenza genome analysis Nextflow workflow
Language:Nextflow22 7 1420
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:Dockerfile191 12 361119
hyphy
HyPhy: Hypothesis testing using Phylogenies
Language:HyPhy217 22 1.3k69

hkunerth/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:HTML0 0 00
hkunerth/fieldbioinformatics
The ARTIC field bioinformatics pipeline
Language:Python0 0 00
hkunerth/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow0 0 00
hkunerth/NanoCLUST
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
Language:Nextflow0 0 00
hkunerth/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
Language:Nextflow0 0 00