hms-dbmi-cellenics/issues

Issues

• [BUG] Download of Processed Seurat object doesn't work

  #110 opened 5 months ago by alexvpickering
  0

• Volcano plot has non-intuitive defaults and confusing text

  #106 opened 10 months ago by alexvpickering
  0

• Download of processed object broken for projects created by upload of Seurat objects

  #109 opened a year ago by alexvpickering
  0

• [bug] The 'Add' button in Data Exploration doesn't work

  #80 opened a year ago by ivababukova
  0

• Allow export as csv for volcano even if it cannot be plotted

  #86 opened a year ago by StefanBabukov
  0

• [cell-level-metadata] Test everything in staging, enable the UI button, make a migration and release

  #90 opened a year ago by ivababukova
  1

• [cell-level metadata] Add flag to qc7 embed and cluster

  #85 opened a year ago by saracastel
  0

• [Bug] Loading/loaded logic of the cell sets when using the ScType cluster annotation is not working properly

  #73 opened a year ago by ivababukova
  0

• [Cell-level metadata] Add file upload details modal

  #66 opened a year ago by cosa65
  0

• [Cell-level metadata] Implement retry, download and replace buttons in the file upload details modal

  #82 opened a year ago by cosa65
  0

• [Bug] Plots do not always persist/save in Plots and Tables module

  #72 opened a year ago by vickymorrison
  0

• [Bug] Violin plots in configure embedding sometimes do not have violins

  #75 opened a year ago by gerbeldo
  0

• [Bug] Absolute and Relative scaling buttons don't seem to be working in the dot plot

  #83 opened a year ago by vickymorrison
  4

• [Bug] Gene expression color in Embedding is incorrect when all values are zero

  #67 opened a year ago by gerbeldo
  0

• [Bug] Cellenics is broken for Explorers

  #70 opened a year ago by vickymorrison
  0

• [cell-level metadata] validate tsv files in the UI

  #62 opened a year ago by gerbeldo
  0

• [Bug(subset-pipeline)] regex chars in sample level metadata

  #69 opened a year ago by gerbeldo
  0

• [Bug] Continuous embedding plot not using the truncatedExpression data with capped expression

  #61 opened a year ago by ogibson
  1

• Add ability to download worker & pipeline images directly from ECR

  #64 opened a year ago by Kristian-A
  1

• [Bug] Inconsistency in default dimensionality reduction name in Seurat object upon rds download

  #89 opened a year ago by saracastel
  0

• [UX issue] For single sample experiments make the elbow plot the default view in step 6 of Data Processing

  #91 opened a year ago by vickymorrison
  0

• [WON'T DO] [Bug] Custom Cell Sets groups multiply when expanding Louvain group in Data Exploration for Seurat Upload experiments

  #79 opened a year ago by gerbeldo
  3

• Make failure in the api requests made by the pipeline trigger a pipeline failure too

  #88 opened a year ago by cosa65
  0

• Restrict upload status changes

  #65 opened a year ago by cosa65
  1

• [Bug] Disable bin step in cell size distribution filter when the dotplot is viewed

  #94 opened a year ago by vickymorrison
  0

• Support multi view for continuous embedding plot

  #96 opened a year ago by vickymorrison
  0

• [Cell-level metadata] Fix cell level cellsets not getting created in some cases

  #92 opened a year ago by cosa65
  0

• Simplify redux sample file logic in the UI

  #98 opened a year ago by cosa65
  0

• Add support for parse [SQL MIGRATION]

  #104 opened a year ago by cosa65
  0

• [Bug] Trajectory analysis doesn't work

  #103 opened a year ago by saracastel
  0

• Creating a custom cell set doesn't work for some uploaded Seurat objects

  #108 opened a year ago by alexvpickering
  2

• [Bug] Download rsd object is broken sometimes

  #99 opened a year ago by saracastel
  2

• [Bug] Pathway analysis doesn't work

  #100 opened a year ago by saracastel
  1

• uploaded Seurat objects include scDblFinder metadata columns as clusterings

  #107 opened a year ago by alexvpickering
  0

• Rearranging sample order doesn't always work

  #105 opened a year ago by alexvpickering
  0

• Autoscale worker pod replicas from zero

  #77 opened a year ago by alexvpickering
  0

• [Bug] Download of normalised expression matrix is broken in default staging environment

  #102 opened a year ago by ivababukova
  0

• [Bug] Download of Seurat object doesn't work

  #101 opened a year ago by ivababukova
  2

• Make the programmatic interface work

  #97 opened a year ago by cosa65
  0

• [Bug] Elbow plot principal component indicator does not update

  #95 opened a year ago by vickymorrison
  0

• [Bug] Remove the 'Grid lines weight' controls from Violin plot and Frequency plot

  #93 opened a year ago by vickymorrison
  0

• [Cell-Level Metadata] Research restricting characters so that R can handle well

  #87 opened a year ago by cosa65
  0

• [BUG] replace file option for a successfully uploaded sample file doesn't work

  #84 opened a year ago by StefanBabukov
  0

• Move Github CI builds to use Github OIDC for AWS permissions

  #81 opened a year ago by ivababukova
  0

• Order clusters lexicographically when uploading a Seurat Object

  #78 opened a year ago by gerbeldo
  0

• Upgrade versions of Nextjs, Vitessce and other packages [RELEASED]

  #71 opened a year ago by ivababukova
  0

• [Bug] Running ScType hides the heatmap. and results are not shown until the page is refreshed

  #76 opened a year ago by gerbeldo
  1

• Cell ID box in heatmap does not move when hovering

  #74 opened a year ago by gerbeldo
  0

• [Bug] Download rds object uses wrong column names for ScType annotations

  #63 opened a year ago by saracastel
  0

• [Bug] Stop the bundle changes spam in UI

  #68 opened a year ago by StefanBabukov
  0