hmyh1202

hmyh1202's Stars

• jsvine/pdfplumber

  Plumb a PDF for detailed information about each char, rectangle, line, et cetera — and easily extract text and tables.

  Language:Python7.1k93568691

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java993157808371

• ryanlayer/samplot

  Plot structural variant signals from many BAMs and CRAMs

  Language:Python5351211568

• CGATOxford/UMI-tools

  Tools for handling Unique Molecular Identifiers in NGS data sets

  Language:Python49736501192

• hbctraining/In-depth-NGS-Data-Analysis-Course

  Language:HTML442455269

• Illumina/hap.py

  Haplotype VCF comparison tools

  Language:C++42341176125

• ohssr-cf/ohssr

  293282345

• SpatialTranscriptomicsResearch/st_pipeline

  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

  Language:Python8272030

• isovic/raptor

  Graph-based mapping of long sequences, noisy or HiFi.

  Language:Perl54912

• Magdoll/SQANTI2

  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3

  Language:Python3886915

• Dowell-Lab/DAStk

  Differential ATAC-seq toolkit

  Language:Python276327

• dancooke/starfish

  Intersect multiple VCF files with haplotype awareness

  Language:Python25352

• chunjie-sam-liu/GSCALite

  GSCALite: Gene set for cancer analysis

  Language:R237114

• SpatialTranscriptomicsResearch/st_spot_detector

  A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.

  Language:JavaScript2383110

• schatzlab/scikit-ribo

  Accurate estimation and robust modelling of translation dynamics at codon resolution

  Language:Python19988

• SpatialTranscriptomicsResearch/st_viewer

  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets

  Language:C++13404

• plantformatics/scATAC_seq_pipeline

  Language:Shell5100

• hmyh1202/isoSeq3_test

  A simple test report for isoSeq3 of PacificBiosciences

  4100

• hmyh1202/atac_dnase_pipelines

  ATAC-seq and DNase-seq processing pipeline

  Language:Python2100

• stilianoudakis/TAD_predictive_modeling

  Predictive modeling of topologically associating domains using epigenomic annotations

  Language:R2310

• hmyh1202/DSS

  Language:R1100

• hmyh1202/FuChouMethyl

  Methyl Pipeline

  Language:LilyPond1100

• hmyh1202/hans.github.io

  Language:HTML1000

• hmyh1202/NCRF

  Cancer metastasis detection with neural conditional random field (NCRF)

  Language:Python110

• hmyh1202/split_alignment

  Seperate ma&fa source reads from aligned BAM using snpSplit tools

  Language:Perl100

• hmyh1202/useDocker

  Dockerfile

  Language:Dockerfile110

• JiyangChang/XiaoTools

  miscellaneous scripts

  Language:Python1200

• suyanxun/tools

  生物信息分析小工具

  1000