hoelzer

hoelzer's Stars

• satwikkansal/wtfpython

  What the f*ck Python? 😱

  Language:Python35.9k7212112.7k

• ibraheemdev/modern-unix

  A collection of modern/faster/saner alternatives to common unix commands.

  31.3k39481788

• charmbracelet/glow

  Render markdown on the CLI, with pizzazz! 💅🏻

  Language:Go16.6k75272372

• has2k1/plotnine

  A Grammar of Graphics for Python

  Language:Python4.1k65691228

• rstudio/bookdown

  Authoring Books and Technical Documents with R Markdown

  Language:JavaScript3.8k1251.1k1.3k

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.8k893.4k642

• duerrsimon/bioicons

  A library of free open source icons for science illustrations in biology and chemistry

  Language:Vue1.4k174978

• facundoolano/rpg-cli

  Your filesystem as a dungeon!

  Language:Rust1.4k103932

• cov-lineages/pango-designation

  Repository for suggesting new lineages that should be added to the current scheme

  Language:Jupyter Notebook1k802.3k98

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python958107175

• killiansheriff/LovelyPlots

  Matplotlib style sheets to nicely format figures for scientific papers, thesis and presentations while keeping them fully editable in Adobe Illustrator.

  Language:Python8545436

• deeptools/pyGenomeTracks

  python module to plot beautiful and highly customizable genome browser tracks

  Language:Python78231210115

• seq-lang/seq

  A high-performance, Pythonic language for bioinformatics

  Language:C++7002313050

• LaPreprint/LaPreprint

  📝 A nicely formatted LaTeX preprint template

  Language:TeX55693074

• oschwengers/bakta

  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  Language:Python4621424857

• bioconvert/bioconvert

  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

  Language:Python3712027444

• aineniamh/snipit

  snipit: summarise snps relative to your reference sequence

  Language:Python15043028

• iqbal-lab-org/pandora

  Pan-genome inference and genotyping with long noisy or short accurate reads

  Language:C++1121022414

• cxli233/customized_upset_plots

  Make customized upset plots: from raw data to plots

  62326

• rrwick/Verticall

  Recombination-free trees

  Language:Python56452

• lenaschimmel/sc2rf

  SARS-Cov-2 Recombinant Finder for fasta sequences

  Language:Python4893213

• kevlar-dev/kevlar

  Reference-free variant discovery in large eukaryotic genomes

  Language:Python4151699

• rki-mf1/clean

  A nextflow pipeline for decontamination of short reads, long reads and contigs

  Language:Nextflow326533

• goldman-gp-ebi/SWAMPy

  Language:Python12865

• theosanderson/Codon2Nucleotide

  Language:JavaScript10262

• ukhsa-collaboration/LOMA

  A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.

  Language:Nextflow10100

• rki-mf1/CoVpipe2

  SARS-CoV-2 genome reconstruction for Illumina data in Nextflow

  Language:Nextflow43311

• phiweger/adaptive

  Supporting information for a study on adaptive nanopore sequencing

  320

• rki-mf1/VLQ-nf

  Estimate SC2 lineage abundances from wastewater samples

  Language:Nextflow3230

• StefanFrankBio/dNdS_Calculator

  Language:Python1200