Demultiplex the Nanopore barcoding data
npBarcode is a tool to facilitate real-time demultiplexing for Nanopore sequencing data. It was developed as part of Japsa package where its source code and documentation reside.
npBarcode includes command-line module jsa.np.barcode and also integrated into npReader.
One may refer to Japsa documentation for instructions to install the packages of interest.
Detailed usage of npBarcode including setting up downstream analysis afterward will be updated in http://japsa.readthedocs.io/en/latest/tools/jsa.np.barcode.html
General information of Japsa can be found on its ReadTheDoc
If you find npBarcode useful for your research, please cite its publication:
Nguyen, S. H., Duarte, T. P., Coin, L. J., & Cao, M. D. (2017). Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode. Bioinformatics, 33(24), 3988-3990.
See Japsa license