Error miniprot
rlibouba opened this issue · 3 comments
Hello,
When I tried to leave the sub-module miniprit, I got this error:
Traceback (most recent call last): File "/home/rlibouba/.conda/envs/mamba/envs/compleasm/bin/compleasm", line 10, in <module> sys.exit(main()) File "/home/rlibouba/.conda/envs/mamba/envs/compleasm/lib/python3.7/site-packages/compleasm.py", line 2534, in main args.func(args) File "/home/rlibouba/.conda/envs/mamba/envs/compleasm/lib/python3.7/site-packages/compleasm.py", line 2348, in miniprot miniprot_execute_path = MiniprotRunner.search_miniprot() AttributeError: type object 'MiniprotRunner' has no attribute 'search_miniprot'
I installed compleams using conda and followed the instructions on your github.
Do you know what the problem is?
Thank you very much.
Have a nice day,
Romane
Hi @rlibouba,
I have fix the bug in the code. Could you clone the source code and re-run it in the existing compleasm env?
e.g.
git clone https://github.com/huangnengCSU/compleasm.git
python compleasm.py miniprot -a genome.fasta -p protein.faa -o output_dir -t 8
Thanks!
Hello @huangnengCSU ,
Thank you for your help. By cloning the git, it worked.
Would it be possible to open a release to update the conda package, please?
Have a nice day,
Romane