huangnengCSU

huangnengCSU's Stars

• mbadolato/iTerm2-Color-Schemes

  Over 325 terminal color schemes/themes for iTerm/iTerm2. Includes ports to Terminal, Konsole, PuTTY, Xresources, XRDB, Remmina, Termite, XFCE, Tilda, FreeBSD VT, Terminator, Kitty, MobaXterm, LXTerminal, Microsoft's Windows Terminal, Visual Studio, Alacritty, and many more

  Language:Shell24.9k6.4k

• smarco/WFA2-lib

  WFA-lib: Wavefront alignment algorithm library v2

  Language:C16238

• Daniel-Liu-c0deb0t/block-aligner

  SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

  Language:Jupyter Notebook1287

• webinstall/webi-installers

  Primary and community-submitted packages for webinstall.dev

  Language:Shell2k226

• mhvuze/MonsterHunterRiseModding

  Work in progress Wiki for modding Monster Hunter Rise.

  Language:Batchfile34155

• Xinglab/espresso

  Language:Python584

• HunterPie/HunterPie

  A clean, modern and robust overlay for Monster Hunter games.

  Language:C#70587

• jdhao/nvim-config

  A modern Neovim configuration with full battery for Python, Lua, C++, Markdown, LaTeX, and more...

  Language:Lua3.7k532

• rockerBOO/awesome-neovim

  Collections of awesome neovim plugins.

  16.5k742

• neovim/neovim

  Vim-fork focused on extensibility and usability

  Language:Vim Script84.6k5.8k

• HunterPie/HunterPie-legacy

  A complete, modern and clean overlay with Discord Rich Presence integration for Monster Hunter: World.

  Language:C#43583

• attractivechaos/klib

  A standalone and lightweight C library

  Language:C4.2k562

• Gaius-Augustus/Augustus

  Genome annotation with AUGUSTUS

  Language:C++291112

• Gaius-Augustus/GALBA

  GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

  Language:Perl1374

• marbl/verkko

  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

  Language:Python31230

• mobinasri/flagger

  Evaluating genome assemblies

  Language:C715

• sanger-tol/blobtoolkit

  Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.

  Language:Nextflow114

• bcgsc/RNA-Bloom

  :hibiscus: reference-free transcriptome assembly for short and long reads

  Language:Java987

• Kingsford-Group/scallop

  Scallop is a reference-based transcriptome assembler for RNA-seq

  Language:C++8916

• Magdoll/cDNA_Cupcake

  Miscellaneous collection of Python and R scripts for processing Iso-Seq data

  Language:Python259104

• gpertea/stringtie

  Transcript assembly and quantification for RNA-Seq

  Language:C++39378

• ablab/IsoQuant

  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

  Language:Python15414

• lh3/miniprot

  Align proteins to genomes with splicing and frameshift

  Language:C34018

• soedinglab/metaeuk

  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

  Language:C18023

• yunhaowang/IsoSeqSim

  Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies

  Language:Python114

• nanoporetech/remora

  Methylation/modified base calling separated from basecalling.

  Language:Python16221

• refresh-bio/agc

  Assembled Genomes Compressor

  Language:C++15913

• xfengnefx/hifiasm-meta

  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.

  Language:C++618

• haowenz/sigmap

  A streaming method for mapping nanopore raw signals

  Language:C++318

• PengNi/ccsmeth

  Detecting DNA methylation from PacBio CCS reads

  Language:Python7511