huangnengCSU

huangnengCSU's Stars

• kingToolbox/WindTerm

  A professional cross-platform SSH/Sftp/Shell/Telnet/Tmux/Serial terminal.

  Language:C25.8k2k

• vcftools/vcftools

  A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

  Language:C++521148

• buaazp/vimconf

  Personal vim conf and plugins for Mac and Linux.

  Language:Vim script7330

• microsoft/language-server-protocol

  Defines a common protocol for language servers.

  Language:HTML11.7k843

• dfguan/purge_dups

  haplotypic duplication identification tool

  Language:C23223

• lh3/srf

  SRF: Satellite Repeat Finder

  Language:TeX946

• lbcb-sci/racon

  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

  Language:C++22034

• AntonBankevich/LJA

  Language:C++11316

• xjtu-omics/SVision

  Detecting genome structural variants with deep learning in single molecule sequencing

  Language:Python10610

• tanghaibao/allhic

  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

  Language:Jupyter Notebook6014

• jltsiren/gbwtgraph

  GBWT-based handle graph

  Language:C++3111

• PengNi/deepsignal-plant

  Detecting methylation using signal-level features from Nanopore sequencing reads of plants

  Language:Python5812

• lh3/minigraph

  Sequence-to-graph mapper and graph generator

  Language:C43939

• maickrau/GraphAligner

  Language:C++26832

• google/deepconsensus

  DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

  Language:Python23536

• bluenote-1577/os-minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C10

• lh3/yak

  Yet another k-mer analyzer

  Language:C1339

• marbl/merqury

  k-mer based assembly evaluation

  Language:Shell30821

• lh3/dipcall

  Reference-based variant calling pipeline for a pair of phased haplotype assemblies

  Language:JavaScript10010

• rrwick/Rebaler

  reference-based long read assemblies of bacterial genomes

  Language:Python4710

• sunface/rust-course

  “连续八年成为全世界最受喜爱的语言，无 GC 也无需手动内存管理、极高的性能和安全性、过程/OO/函数式编程、优秀的包管理、JS 未来基石" — 工作之余的第二语言来试试 Rust 吧。本书拥有全面且深入的讲解、生动贴切的示例、德芙般丝滑的内容，这可能是目前最用心的 Rust 中文学习教程 / Book

  Language:Rust27.2k2.4k

• lhclqslove/my_orderhash_compress

  Language:C1

• eblerjana/whatshap-polyphase-experiments

  Language:Python9

• luntergroup/polyploid

  Benchmarking variant calling in polyploids

  Language:Jupyter Notebook132

• jax-ml/jax

  Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

  Language:Python31.9k3k

• pblischak/polyploid-genotyping

  SNP genotyping in polyploids

  Language:C++163

• hiruna72/slow5-dorado

  A LibTorch Basecaller for Oxford Nanopore Reads

  Language:C++9

• schneebergerlab/GameteBinning_tetraploid

  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings

  Language:C++121

• KolmogorovLab/hapdup

  Pipeline to convert a haploid assembly into diploid

  Language:Python10012

• Lightning-AI/pytorch-lightning

  Pretrain, finetune ANY AI model of ANY size on multiple GPUs, TPUs with zero code changes.

  Language:Python29.3k3.5k