hubmapconsortium/hubmap-api-py-client

Issues

• Distinguish expected and unexpected errors

  #75 opened 3 years ago by mccalluc
  0

• Documentation should explain `p=1.0` in examples

  #74 opened 3 years ago by mccalluc
  0

• Identify single source of truth for organ names

  #73 opened 3 years ago by mccalluc
  0

• Use the new fast gene expression API

  #67 opened 3 years ago by mccalluc
  7

• Support (default to?) `and` in gene queries

  #70 opened 3 years ago by mccalluc
  0

• To make it more idiomatic, allow iteration

  #31 opened 4 years ago by mccalluc
  0

• Parameterize doc tests

  #60 opened 4 years ago by mccalluc
  1

• In publish.sh, update the CHANGELOG

  #46 opened 4 years ago by mccalluc
  0

• Finish magic method refactor

  #56 opened 4 years ago by mccalluc
  1

• Post #41, supply default for `logical_operator`

  #42 opened 4 years ago by mccalluc
  1

• client.select_cells(where='protein', ...) example?

  #17 opened 4 years ago by mccalluc
  3

• When can genomic_modality='atac' be used?

  #8 opened 4 years ago by mccalluc
  4

• doc test for API error response.

  #43 opened 4 years ago by mccalluc
  0

• client.select_genes(where='cluster', has='...?')

  #16 opened 4 years ago by mccalluc
  2

• Page through results? `offset` in addition to `limit`?

  #29 opened 4 years ago by mccalluc
  4

• To make it more idiomatic, use slice syntax

  #30 opened 4 years ago by mccalluc
  0

• Is `p_value: float = -1.0` meaningful, or just a way a saying that it's required?

  #11 opened 4 years ago by mccalluc
  2

• Add ASCT-B to matrix

  #37 opened 4 years ago by mccalluc
  0

• Use github CI

  #36 opened 4 years ago by mccalluc
  1

• rename to "hubmap-api-py-client"

  #34 opened 4 years ago by mccalluc
  1

• Issue templates for bug / enhancement / question

  #32 opened 4 years ago by mccalluc
  0

• cluster detail keys should be a superset?

  #22 opened 4 years ago by mccalluc
  2

• When I can't get X from Y, is that a TODO, a limitation of the database, or just non-sensical?

  #14 opened 4 years ago by mccalluc
  3

• genomic_modalities should only be allowed on gene->cell?

  #10 opened 4 years ago by mccalluc
  3

• Is there a set range to gene expression levels? Are there units?

  #7 opened 4 years ago by mccalluc
  1

• measure performance

  #24 opened 4 years ago by mccalluc
  1

• Should query always be a list, even if just single valued?

  #19 opened 4 years ago by mccalluc
  2

• Only last dataset from list is used

  #4 opened 4 years ago by mccalluc
  2

• Expand client to hit entities API as needed

  #25 opened 4 years ago by mccalluc
  0

• How are organ names generated? Will they align?

  #9 opened 4 years ago by mccalluc
  2

• More fluent, like SQL

  #6 opened 4 years ago by mccalluc
  1

• Should dataset be UUID instead of integer?

  #13 opened 4 years ago by mccalluc
  3

• Set complement not right?

  #20 opened 4 years ago by mccalluc
  3

• Details for cluster doesn't work?

  #15 opened 4 years ago by mccalluc
  2

• Cell unions are empty

  #3 opened 4 years ago by mccalluc
  1