Hwang Lab

We are amachine learning lab focused on translational research. We develop machine learning algorithms to understand genetic and clinical attributes of disease.

United States of America

Pinned Repositories

Deep_learning_WSI_tutorial
Language:Jupyter Notebook3 1 03
divine
Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
Language:Python12 3 51
HE_IHC_HN_analysis
Integrative Spatial Analysis of H&E and IHC Images Identifies Prognostic Immune Subtypes correlated with Progression Free Survival in HPV-Related Oropharyngeal Squamous Cell Carcinoma
Language:Jupyter Notebook5 0 21
NTriPath
NTriPath Matlab code
Language:Matlab6 1 23
pathology_analysis_examples
tutorials for wsi analysis by Hongming Xu
Language:Python5 1 00
rnaseq_workshop
Cleveland Clinic Bioinformatics Workshop for RNA-Seq data analysis
6 3 04
singlecell_tutorial
single cell sequencing analysis tutorial
Language:HTML16 3 07
tcga-prad-cslbp
TCGA prostate cancer Gleason score prediction using completed and statistical local binary patterns (Matlab/Python programs)
Language:MATLAB5 1 04
tcga_tmb_prediction
TCGA BLCA tmb prediction by Hongming Xu
Language:MATLAB13 1 14
TILs_Analysis
Pan-cancer tils analysis study by Hongming Xu
Language:Python13 1 12

Hwang Lab's Repositories

hwanglab/singlecell_tutorial
single cell sequencing analysis tutorial
Language:HTML16 3 07
hwanglab/tcga_tmb_prediction
TCGA BLCA tmb prediction by Hongming Xu
Language:MATLAB13 1 14
hwanglab/TILs_Analysis
Pan-cancer tils analysis study by Hongming Xu
Language:Python13 1 12
hwanglab/divine
Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
Language:Python12 3 51
hwanglab/NTriPath
NTriPath Matlab code
Language:Matlab6 1 23
hwanglab/rnaseq_workshop
Cleveland Clinic Bioinformatics Workshop for RNA-Seq data analysis
6 3 04
hwanglab/HE_IHC_HN_analysis
Integrative Spatial Analysis of H&E and IHC Images Identifies Prognostic Immune Subtypes correlated with Progression Free Survival in HPV-Related Oropharyngeal Squamous Cell Carcinoma
Language:Jupyter Notebook5 0 21
hwanglab/pathology_analysis_examples
tutorials for wsi analysis by Hongming Xu
Language:Python5 1 00
hwanglab/tcga-prad-cslbp
TCGA prostate cancer Gleason score prediction using completed and statistical local binary patterns (Matlab/Python programs)
Language:MATLAB5 1 04
hwanglab/DGP_RF_WSL_TripletLoss
Language:Python4 1 00
hwanglab/apa_atingLab2019
DNA methylation regulates alternative polyadenylation via CTCF and the cohesin complex (2019 paper submission)
Language:R3 2 02
hwanglab/Deep_learning_WSI_tutorial
Language:Jupyter Notebook3 1 03
hwanglab/AML_biomarkers
Language:R2 1 00
hwanglab/tcga_stroma_prediction
Language:Python2 2 0
hwanglab/WSI_registration
Language:Jupyter Notebook2 0 00
hwanglab/wsitiler
Tools for dividing pathology whole slide images into tiles and save them as individual files.
Language:Python2 0 130
hwanglab/Yonsei_gastric_cancer_32genes
Language:MATLAB2 1 10
hwanglab/binf_workshop_2018_01
Cleveland Clinic Bioinformatics Workshop January 2018
Language:Shell1 3 02
hwanglab/Stromal_ACTA2_ICI_Analysis
Language:R1 1 00
hwanglab/2022_multiomic_GC
Multi-omics Reveals Microbiome, Host Gene Expression, and Immune Landscape in Gastric Carcinogenesis
Language:R0 2 01
hwanglab/BayesianSNMTF
Language:MATLAB0 1 00
hwanglab/CRISPinatoR_database
Database generating source codes for CRISPinatoR
Language:C0 2 00
hwanglab/GC_ICI_response_prediction
Language:Python0 0 00
hwanglab/hwanglab_2021_tigitCarT
TIGIT dysfunction role in CD19 CAR-T therapy for NHL
Language:R0 2 00
hwanglab/MSI-SEER
Language:Python00
hwanglab/test
Language:Python0 0 00
hwanglab/istar
Language:Python0 0
hwanglab/OptiType
Precision HLA typing from next-generation sequencing data
Language:Python1 0