Hwang Lab
We are amachine learning lab focused on translational research. We develop machine learning algorithms to understand genetic and clinical attributes of disease.
United States of America
Pinned Repositories
Deep_learning_WSI_tutorial
divine
Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
HE_IHC_HN_analysis
Integrative Spatial Analysis of H&E and IHC Images Identifies Prognostic Immune Subtypes correlated with Progression Free Survival in HPV-Related Oropharyngeal Squamous Cell Carcinoma
NTriPath
NTriPath Matlab code
pathology_analysis_examples
tutorials for wsi analysis by Hongming Xu
rnaseq_workshop
Cleveland Clinic Bioinformatics Workshop for RNA-Seq data analysis
singlecell_tutorial
single cell sequencing analysis tutorial
tcga-prad-cslbp
TCGA prostate cancer Gleason score prediction using completed and statistical local binary patterns (Matlab/Python programs)
tcga_tmb_prediction
TCGA BLCA tmb prediction by Hongming Xu
TILs_Analysis
Pan-cancer tils analysis study by Hongming Xu
Hwang Lab's Repositories
hwanglab/singlecell_tutorial
single cell sequencing analysis tutorial
hwanglab/TILs_Analysis
Pan-cancer tils analysis study by Hongming Xu
hwanglab/divine
Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
hwanglab/tcga_tmb_prediction
TCGA BLCA tmb prediction by Hongming Xu
hwanglab/NTriPath
NTriPath Matlab code
hwanglab/rnaseq_workshop
Cleveland Clinic Bioinformatics Workshop for RNA-Seq data analysis
hwanglab/HE_IHC_HN_analysis
Integrative Spatial Analysis of H&E and IHC Images Identifies Prognostic Immune Subtypes correlated with Progression Free Survival in HPV-Related Oropharyngeal Squamous Cell Carcinoma
hwanglab/pathology_analysis_examples
tutorials for wsi analysis by Hongming Xu
hwanglab/tcga-prad-cslbp
TCGA prostate cancer Gleason score prediction using completed and statistical local binary patterns (Matlab/Python programs)
hwanglab/Deep_learning_WSI_tutorial
hwanglab/DGP_RF_WSL_TripletLoss
hwanglab/apa_atingLab2019
DNA methylation regulates alternative polyadenylation via CTCF and the cohesin complex (2019 paper submission)
hwanglab/AML_biomarkers
hwanglab/tcga_stroma_prediction
hwanglab/wsitiler
Tools for dividing pathology whole slide images into tiles and save them as individual files.
hwanglab/Yonsei_gastric_cancer_32genes
hwanglab/binf_workshop_2018_01
Cleveland Clinic Bioinformatics Workshop January 2018
hwanglab/Stromal_ACTA2_ICI_Analysis
hwanglab/WSI_registration
hwanglab/2022_multiomic_GC
Multi-omics Reveals Microbiome, Host Gene Expression, and Immune Landscape in Gastric Carcinogenesis
hwanglab/CRISPinatoR_database
Database generating source codes for CRISPinatoR
hwanglab/hwanglab_2021_tigitCarT
TIGIT dysfunction role in CD19 CAR-T therapy for NHL
hwanglab/BayesianSNMTF
hwanglab/GC_ICI_response_prediction
hwanglab/istar
hwanglab/OptiType
Precision HLA typing from next-generation sequencing data
hwanglab/test