Pinned Repositories
AACTrials
Contains some scripts for the corpus prep
annotation-tools
Tools developed for AACR GENIE to allow annotation of vcf and maf files from a number of centers and merging the results
apiflask
A lightweight Python web API framework.
aws-htan-infra
AWS CloudFormation templates for deploying HTAN infrastructure
aws-infra
Global Sage Bionetworks AWS Infrastructure
aws-toolbox
A Collection of Awesome Tools and Scripts for Cloud Engineers
btc-scrna-pipeline
A Nextflow pipeline for single-cell RNA-Seq dataset
cache_warmer
cbx-modules
text-norm
Text normalization exercise for NLP
hweej's Repositories
hweej/annotation-tools
Tools developed for AACR GENIE to allow annotation of vcf and maf files from a number of centers and merging the results
hweej/apiflask
A lightweight Python web API framework.
hweej/aws-htan-infra
AWS CloudFormation templates for deploying HTAN infrastructure
hweej/aws-infra
Global Sage Bionetworks AWS Infrastructure
hweej/aws-toolbox
A Collection of Awesome Tools and Scripts for Cloud Engineers
hweej/btc-scrna-pipeline
A Nextflow pipeline for single-cell RNA-Seq dataset
hweej/cache_warmer
hweej/cbioportal
cBioPortal for Cancer Genomics
hweej/cellxgene
An interactive explorer for single-cell transcriptomics data
hweej/cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
hweej/cmo-pipelines
hweej/datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
hweej/datahub-study-curation-tools
Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.
hweej/flask-boto3
Flask extension that ties boto3 connectors to the application context
hweej/genome-nexus-annotation-pipeline
Library and tool for annotating MAF files using Genome Nexus Webserver API
hweej/HTAN
hweej/htan-portal
The HTAN Data Portal
hweej/htan-vitessce-proto
An example configuration based off 10x visium tutorial
hweej/htan-webassets
hweej/knowledgesystems-k8s-deployment
Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes
hweej/nextflow-infra
AWS CloudFormation templates for deploying Nextflow infrastructure
hweej/nf-artist
A NextFlow pipeline to run image rendering process to generate resources for the HTAN Portal.
hweej/organizations-infra
Sage AWS Organizations
hweej/s3batch-phi-detector
hweej/schematic
Package for data model and data ingress management
hweej/scicomp-provisioner
An service to auto provision resources
hweej/single-cell-tools
hweej/steampipe
Use SQL to instantly query your cloud services (AWS, Azure, GCP and more). Open source CLI. No DB required.
hweej/synapsePythonClient
Programmatic interface to Synapse services for Python
hweej/vcftomafgnanno