Pinned Repositories
10-fold_Cross_Validation
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
auspice
Web app for visualizing pathogen evolution
bc-covid-epi-rt
A method to estimate Effective Reproductive Number (Rt) using the province of BC's case report data.
CARD
CARD-Analysis
ChatPaper
Use ChatGPT to summarize the arXiv papers.
chiral_protein_design
Codon2Nucleotide
codonpair
A codon pair score/codon pair bias calculator
hyzhou1990's Repositories
hyzhou1990/artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
hyzhou1990/auspice
Web app for visualizing pathogen evolution
hyzhou1990/CARD
hyzhou1990/CARD-Analysis
hyzhou1990/ChatPaper
Use ChatGPT to summarize the arXiv papers.
hyzhou1990/chiral_protein_design
hyzhou1990/Codon2Nucleotide
hyzhou1990/codonw-slim
A slimmed down fork of CodonW with python bindings
hyzhou1990/CovTracker
hyzhou1990/CPM
Easy-to-use CPM for Chinese text generation（基于CPM的中文文本生成）
hyzhou1990/disco-diffusion-wrapper
Implementation of disco-diffusion wrapper that could run on your own GPU with batch text input.
hyzhou1990/EpiEstim
A tool to estimate time varying instantaneous reproduction number during epidemics
hyzhou1990/evolocity
Evolutionary velocity with protein language models
hyzhou1990/freebayes
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
hyzhou1990/genslm
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
hyzhou1990/LibFewShot
LibFewShot: A Comprehensive Library for Few-shot Learning.
hyzhou1990/mixOmics
Development repository for the Bioconductor package 'mixOmics '
hyzhou1990/paper-code
Code for the manuscript "Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2"
hyzhou1990/papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
hyzhou1990/Pepline-for-virus-analysis
hyzhou1990/Pipe-line-for-using-API-from-outbreak.info
hyzhou1990/poreCov
SARS-CoV-2 workflow for nanopore sequence data
hyzhou1990/PyVCF3
A Variant Call Format reader for Python.
hyzhou1990/scrna_seurat_pipeline
comprehensive analysis of single-cell transcriptomics data
hyzhou1990/snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
hyzhou1990/stablediffusion
High-Resolution Image Synthesis with Latent Diffusion Models
hyzhou1990/Supp-for-paper-reviewed
Supp for paper titled Zika virus targets human trophoblast stem cells and prevents syncytialization in placental trophoblast organoids
hyzhou1990/viral-mutation
Language modeling of viral evolution
hyzhou1990/wf-artic
ARTIC SARS-CoV-2 workflow and reporting
hyzhou1990/wf-single-cell