This is a workflow for the analysis of virus evolution, it contains a example jupyter notebook for step by step analysis
In this Repositories, two python scripts were included for the analysis of +ssRNA virus and -ssRNA virus.
Biopython, cd-hit, iqtree, mafft were the essencial package/tools to run the above scripts normally.
The scritp named with sitePath were the script to guide you on the using of sitePath
ggtree, treeio, ggolot2, sitePath were required for the run of this script