iamakhilverma
Associate Researcher | Bioinformatics
Icahn School of Medicine at Mount SinaiManhattan, New York, United States
Pinned Repositories
2019_scWorkshop
Repo for Physalia course Analysis of Single Cell RNA-Seq data
analysis_of_sars_cov2_seqs_from_gisaid
This repository contains all the code and data pertinent to our work "The Slowing Rate of CpG Depletion in SARS-CoV-2 Genomes Is Consistent with Adaptations to the Human Host" published in Molecular Biology and Evolution.
awesome-cli-apps
🖥 📊 🕹 🛠A curated list of command line apps
awesome-mac
 Now we have become very big, Different from the original idea. Collect premium software in various categories.
awesome-nextflow
A curated list of nextflow based pipelines
awesome-shell
A curated list of awesome command-line frameworks, toolkits, guides and gizmos. Inspired by awesome-php.
hcv_seqs_analysis
Analysis of publicly available HCV sequences from LANL's HCV database
iamakhilverma.github.io
Leonid Keselman's Jekyll fork of Jon Barron's website (https://jonbarron.info/) for use in jekyll builds with markdown page updates
motif_frequency_analyzer
iamakhilverma's Repositories
iamakhilverma/analysis_of_sars_cov2_seqs_from_gisaid
This repository contains all the code and data pertinent to our work "The Slowing Rate of CpG Depletion in SARS-CoV-2 Genomes Is Consistent with Adaptations to the Human Host" published in Molecular Biology and Evolution.
iamakhilverma/awesome-cli-apps
🖥 📊 🕹 🛠A curated list of command line apps
iamakhilverma/awesome-nextflow
A curated list of nextflow based pipelines
iamakhilverma/hcv_seqs_analysis
Analysis of publicly available HCV sequences from LANL's HCV database
iamakhilverma/iamakhilverma.github.io
Leonid Keselman's Jekyll fork of Jon Barron's website (https://jonbarron.info/) for use in jekyll builds with markdown page updates
iamakhilverma/motif_frequency_analyzer
iamakhilverma/awesome-zsh-plugins
A collection of ZSH frameworks, plugins & themes inspired by the various awesome list collections out there.
iamakhilverma/BayesPrism
A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
iamakhilverma/build-your-own-x
🤓 Build your own (insert technology here)
iamakhilverma/cheatsheets
RStudio Cheat Sheets
iamakhilverma/codingBat-python
My solutions to problems on CodingBat (https://codingbat.com/python)
iamakhilverma/conserved_stretches_in_sars_cov2
iamakhilverma/cs229-2018-autumn
All notes and materials for the CS229: Machine Learning course by Stanford University
iamakhilverma/dotfiles
My dotfiles and personal preferences
iamakhilverma/dsbook
Repository for data science book
iamakhilverma/early_mutation_blitzkrieg_in_sars_cov2
This repository contains the analysis for the work done on analyzing mutations in over 11 million complete SARS-CoV-2 genomes. We mainly used R but carried out some analyses in python
iamakhilverma/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
iamakhilverma/git-it-electron
:computer: :mortar_board: Git-it is a (Mac, Win, Linux) Desktop App for Learning Git and GitHub
iamakhilverma/guide.bash.academy
Bash Academy - The Bash Guide
iamakhilverma/ml-coursera-python-assignments
Python assignments for the machine learning class by andrew ng on coursera with complete submission for grading capability and re-written instructions.
iamakhilverma/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
iamakhilverma/ParmEd
Parameter/topology editor and molecular simulator
iamakhilverma/peps
Python Enhancement Proposals
iamakhilverma/practical-python
Practical Python Programming (course by @dabeaz)
iamakhilverma/python-tutorial
A Python 3 programming tutorial for beginners.
iamakhilverma/short_exercise_tsankov_lab
Short coding exercise in R to serve as a refresher in single-cell RNA-seq analysis
iamakhilverma/single-cell-pseudotime
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
iamakhilverma/solutions-Data-Analysis-and-Prediction-Algorithms-with-R
Solutions to the exercises in the book Data Analysis and Prediction Algorithms with R by Professor Rafael A. Irizarry
iamakhilverma/the-art-of-command-line
Master the command line, in one page
iamakhilverma/youtube-dl
Command-line program to download videos from YouTube.com and other video sites