iamakhilverma
Associate Researcher | Bioinformatics
Icahn School of Medicine at Mount SinaiManhattan, New York, United States
Pinned Repositories
2019_scWorkshop
Repo for Physalia course Analysis of Single Cell RNA-Seq data
analysis_of_sars_cov2_seqs_from_gisaid
This repository contains all the code and data pertinent to our work "The Slowing Rate of CpG Depletion in SARS-CoV-2 Genomes Is Consistent with Adaptations to the Human Host" published in Molecular Biology and Evolution.
awesome-cli-apps
🖥 📊 🕹 🛠 A curated list of command line apps
awesome-mac
Now we have become very big, Different from the original idea. Collect premium software in various categories.
awesome-nextflow
A curated list of nextflow based pipelines
awesome-shell
A curated list of awesome command-line frameworks, toolkits, guides and gizmos. Inspired by awesome-php.
hcv_seqs_analysis
Analysis of publicly available HCV sequences from LANL's HCV database
iamakhilverma.github.io
Leonid Keselman's Jekyll fork of Jon Barron's website (https://jonbarron.info/) for use in jekyll builds with markdown page updates
motif_frequency_analyzer
iamakhilverma's Repositories
iamakhilverma/2019_scWorkshop
Repo for Physalia course Analysis of Single Cell RNA-Seq data
iamakhilverma/awesome-mac
Now we have become very big, Different from the original idea. Collect premium software in various categories.
iamakhilverma/awesome-shell
A curated list of awesome command-line frameworks, toolkits, guides and gizmos. Inspired by awesome-php.
iamakhilverma/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
iamakhilverma/bash-guide
A guide to learn bash
iamakhilverma/Bash-Oneliner
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
iamakhilverma/bioconductor-cheatsheet
Bioconductor cheat sheet
iamakhilverma/bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
iamakhilverma/Collection-of-notes-about-omics-analyses
Personal notes about work- and coding-related topics
iamakhilverma/comp-genomics-class
Code and examples for JHU Computational Genomics class
iamakhilverma/d3
Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:
iamakhilverma/fuckitjs
The Original Javascript Error Steamroller
iamakhilverma/google-interview-university
A complete computer science study plan to become a software engineer.
iamakhilverma/handy-r-functions
An R script containing handy functions to save time and typing.
iamakhilverma/Jhuang-lab-Bioinformatics-Resources
A curated list of resources for learning bioinformatics.
iamakhilverma/mac_dotfiles
My Mac dot files
iamakhilverma/markdown-cheatsheet
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
iamakhilverma/Porechop
adapter trimmer for Oxford Nanopore reads
iamakhilverma/prep-mcpb
Prepare a metal-containing structure for parameterization with MCPB.py using UCSF Chimera and AmberTools
iamakhilverma/rebound
Command-line tool that instantly fetches Stack Overflow results when an exception is thrown
iamakhilverma/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
iamakhilverma/scRNA.seq.course
Analysis of single cell RNA-seq data course
iamakhilverma/scRNA.seq.datasets
Collection of public scRNA-Seq datasets used by our group
iamakhilverma/self-taught-comp-sc
:mortar_board: Path to a free self-taught education in Computer Science!
iamakhilverma/SingleCellThoughts
Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow, see https://ltla.github.io/SingleCellThoughts for the compiled version.
iamakhilverma/snakemake-broad-uger
Snakemake profile to execute workflows on the Broad Institute UGER cluster
iamakhilverma/some-more-cs-courses
:books: List of awesome university courses for learning Computer Science!
iamakhilverma/taxonomy-problem
Generate a classification report based on a taxonomy
iamakhilverma/terminals-are-sexy
💥 A curated list of Terminal frameworks, plugins & resources for CLI lovers.
iamakhilverma/tsne-online
Online web tool for t-SNE analysis and interactive exploration of algorithm parameters