ibimanji

Pinned Repositories

Spatial_Glioma
Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
Language:R00
zenglab_server
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bento-tools
A Python toolkit for subcellular analysis of spatial transcriptomics data
Language:Python566
SpatialGlue
SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
Language:Python305
SPACE
Language:Jupyter Notebook60
PointFISH
Python scripts used for the paper "PointFISH: learning point cloud representations for RNA localization patterns" published in ECCV 2022 BioImage Computing workshop.
Language:Python30
cell_spot_finding
Instructions on How to Use Cell Counting and Spot Counting Scripts
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navigator
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ibimanji's Repositories

ibimanji/zenglab_server
ibimanji/Spatial_Glioma
Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper