icgc-argo-workflows/gatk-tools

🐛 Populate the JSON with `None` when OxoG score is `NaN`

Closed this issue 4 years ago · 1 comments

lindaxiang commented 4 years ago

Describe the bug

The OxoG populated in the json should be None when OxoG score is NaN:
https://github.com/icgc-argo/gatk-tools/blob/master/tools/gatk-collect-oxog-metrics/gatk-collect-oxog-metrics.py#L109
https://github.com/icgc-argo/gatk-tools/blob/master/tools/gatk-collect-oxog-metrics/gather-oxog-metrics.py#L58

lindaxiang commented 4 years ago

Addressed by https://github.com/icgc-argo/gatk-tools/pull/71