Issues
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in the gatkCalculateContamination process: what does the param tumour_normal do, can it be removed
#57 opened - 1
Implement SelectVariants tool
#55 opened - 1
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GatherBamFiles NF modules
#49 opened - 2
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Update to GATK 4.1.8.0
#43 opened - 1
FilterAlignmentArtifacts NF module
#42 opened - 1
FilterMutectCalls NF module
#41 opened - 1
MergeMutectStats NF module
#40 opened - 1
MergeVcfs NF module
#39 opened - 1
LearnReadOrientationModel NF module
#38 opened - 1
Mutect2 NF module
#37 opened - 1
CalculateContamination NF module
#36 opened - 1
GatherPileupSummaries NF module
#35 opened - 1
GatherBQSRReports NF module
#34 opened - 1
GatherPileupSummaries NF module
#33 opened - 1
GetPileupSummaries NF module
#32 opened - 1
ApplyBQSR NF module
#31 opened - 1
BaseRecalibrator NF module
#30 opened - 1
🐛Potential failures when total number of bases in the given interval happens to be zero (NTOT=0)
#26 opened - 0