ICGC ARGO Workflows
Home of the ICGC ARGO (Accelerate Research in Genomic Oncology) Data Platform Scientific Workflows
Toronto, Ontario
Pinned Repositories
allele-specific-expression
Allele Specific Expression (ASE) analysis package
argo-analysis-pipelines-overview
Overview of ICGC-ARGO Analysis Pipelines
argo-reference-files
Reference files used by the ICGC-ARGO data analysis pipelines
dna-seq-processing-tools
A collection of DNA processing tools / modules used in the ICGC ARGO alignment workflow
dna-seq-processing-wfs
ICGC ARGO DNA-Seq Processing Workflow
dnaalnqc
ICGC-ARGO workflow for DNA-Seq alignment QC
gatk-mutect2-variant-calling
ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow
rna-seq-alignment
RNA-Seq alignment packages
sanger-wgs-variant-calling
ICGC-ARGO Sanger WGS Somatic Variant Calling Workflow
sanger-wxs-variant-calling
ICGC-ARGO Sanger WXS Somatic Variant Calling Workflow
ICGC ARGO Workflows 's Repositories
icgc-argo-workflows/dna-seq-processing-wfs
ICGC ARGO DNA-Seq Processing Workflow
icgc-argo-workflows/rna-seq-alignment
RNA-Seq alignment packages
icgc-argo-workflows/allele-specific-expression
Allele Specific Expression (ASE) analysis package
icgc-argo-workflows/dnaalnqc
ICGC-ARGO workflow for DNA-Seq alignment QC
icgc-argo-workflows/sanger-wgs-variant-calling
ICGC-ARGO Sanger WGS Somatic Variant Calling Workflow
icgc-argo-workflows/dna-seq-processing-tools
A collection of DNA processing tools / modules used in the ICGC ARGO alignment workflow
icgc-argo-workflows/icgc-argo-mutational-signatures
ICGC ARGO Mutational Signatures Workflow Packages
icgc-argo-workflows/rna-editing
RNA editing analysis
icgc-argo-workflows/argo-analysis-pipelines-overview
Overview of ICGC-ARGO Analysis Pipelines
icgc-argo-workflows/argo-qc-tools
Collection of ARGO data quality tool packages
icgc-argo-workflows/metadata-for-benchmarking-datasets
This repository contains metadata information for PCAWG WGS/RNA-Seq/Validation datasets
icgc-argo-workflows/rna-seq-expression-counting
icgc-argo-workflows/argo-reference-files
Reference files used by the ICGC-ARGO data analysis pipelines
icgc-argo-workflows/gatk-mutect2-variant-calling
ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow
icgc-argo-workflows/sanger-wxs-variant-calling
ICGC-ARGO Sanger WXS Somatic Variant Calling Workflow
icgc-argo-workflows/argo-modules
ARGO specific modules using nf-core framework
icgc-argo-workflows/ase
ICGC-ARGO pipeline for analysis of allele specific expression (ASE) based on RNA-seq data
icgc-argo-workflows/data-processing-utility-tools
Collection of utility tools for ARGO data processing
icgc-argo-workflows/dnaaln
ICGC ARGO Workflow for DNA-Seq Alignment
icgc-argo-workflows/gatk-rna-mutect2-variant-calling
GATK Variant Calling for RNA-Seq
icgc-argo-workflows/germlinevar
icgc-argo-workflows/nextflow-data-processing-utility-tools
Nextflow implementation of https://github.com/icgc-argo/data-processing-utility-tools
icgc-argo-workflows/open-access-variant-filtering
icgc-argo-workflows/pre-alignment-qc
icgc-argo-workflows/prealnqc
icgc-argo-workflows/rna-seq-data-simulation
Data simulation scripts for RNA-Seq working group
icgc-argo-workflows/rnaaln
ICGC ARGO Workflow for RNA-Seq Alignment
icgc-argo-workflows/target_seq_bed_files
A repository to capture genes targeted by WES and target-Seq from ICGC-ARGO projects
icgc-argo-workflows/vcf-annotation
ICGC ARGO Workflow for VCF Annotation
icgc-argo-workflows/xml_variant_ingestion
ICGC ARGO variant calling pipeline which digest xml to vcf variant format