/sanger-wxs-variant-calling

ICGC-ARGO Sanger WXS Somatic Variant Calling Workflow

Primary LanguageNextflowGNU Affero General Public License v3.0AGPL-3.0

ICGC ARGO Sanger WXS Variant Calling Workflow

This repository maintains the Nextflow workflow code for Sanger WXS somatic variant calling. The underlying containerized variant calling tools include CaVEMan and Pindle, which are originated from https://github.com/cancerit/dockstore-cgpwxs.