This repository maintains the Nextflow workflow code for Mutect2 somatic variant calling. The underlying variant calling and related tools are originated from GATK https://github.com/broadinstitute/gatk.
icgc-argo-workflows/gatk-mutect2-variant-calling
ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow
NextflowAGPL-3.0