/gatk-mutect2-variant-calling

ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow

Primary LanguageNextflowGNU Affero General Public License v3.0AGPL-3.0

ICGC ARGO GATK Mutect2 Variant Calling Workflow

This repository maintains the Nextflow workflow code for Mutect2 somatic variant calling. The underlying variant calling and related tools are originated from GATK https://github.com/broadinstitute/gatk.