icgc-argo-workflows/rna-seq-alignment

Issues

• Update song_score versions

  #36 opened 8 months ago by edsu7
  3

• Addition of transcriptome output for STAR and update test data

  #30 opened a year ago by lindaxiang
  1

• Whole workflow adjustments to incorporate the updated STAR and payload-gen tools

  #31 opened a year ago by lindaxiang
  1

• Add an option to enable/disable `alignedSeqQC` in workflow

  #29 opened 2 years ago by lindaxiang
  3

• Update the strandedness logics

  #22 opened 3 years ago by lindaxiang
  1

• Specify a non-existent directory under `args.tempdir` for STAR to use as `--outTmpDir`

  #20 opened 3 years ago by lindaxiang
  1

• `SAMFormatException` in the alignment BAM file from STAR

  #11 opened 3 years ago by lindaxiang
  3

• STAR/HiSAT2 output coordinate sorted BAM

  #6 opened 3 years ago by lindaxiang
  2

• Name star/hisat2 output alignments at read group level

  #5 opened 3 years ago by lindaxiang
  1