ICGC ARGO Workflows
Home of the ICGC ARGO (Accelerate Research in Genomic Oncology) Data Platform Scientific Workflows
Toronto, Ontario
Pinned Repositories
allele-specific-expression
Allele Specific Expression (ASE) analysis package
argo-analysis-pipelines-overview
Overview of ICGC-ARGO Analysis Pipelines
argo-reference-files
Reference files used by the ICGC-ARGO data analysis pipelines
dna-seq-processing-tools
A collection of DNA processing tools / modules used in the ICGC ARGO alignment workflow
dna-seq-processing-wfs
ICGC ARGO DNA-Seq Processing Workflow
dnaalnqc
ICGC-ARGO workflow for DNA-Seq alignment QC
gatk-mutect2-variant-calling
ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow
rna-seq-alignment
RNA-Seq alignment packages
sanger-wgs-variant-calling
ICGC-ARGO Sanger WGS Somatic Variant Calling Workflow
sanger-wxs-variant-calling
ICGC-ARGO Sanger WXS Somatic Variant Calling Workflow
ICGC ARGO Workflows 's Repositories
icgc-argo-workflows/alternative-promoter-analysis
Alternative Promoter Analysis Packages
icgc-argo-workflows/variant-calling-tools
A collection of variant calling tools / modules used in ICGC ARGO variant calling workflows
icgc-argo-workflows/icgc-argo-sv-copy-number
WIP pipeline for the Structural Variation and Copy Number Working Group of ICGC-ARGO
icgc-argo-workflows/argo-somatic-variant-calling
A collection of somatic variant callers
icgc-argo-workflows/argo-workflow-docs
Centralized documentation for ARGO workflows, including best practices, development process, references, test and benchmarking datasets.
icgc-argo-workflows/data-qc-tools-and-wfs
A collection of data QC tools / modules used in various ICGC ARGO workflows
icgc-argo-workflows/demo-pkgs1
icgc-argo-workflows/demo-pkgs2
icgc-argo-workflows/gatk-tools
Repository for dockerized GATK tools
icgc-argo-workflows/rna-seq-splicing
RNA-Seq Splicing analyses
icgc-argo-workflows/workflow-repo-migration
SOP and script to migrate ARGO workflow source code repositories to under 'icgc-argo-workflows'