This repository maintains the Nextflow workflow code for Sanger WGS somatic variant calling. The underlying containerized variant calling tools include CaVEMan, Pindel, ASCAT and BRASS, which are originated from https://github.com/cancerit/dockstore-cgpwgs.
icgc-argo-workflows/sanger-wgs-variant-calling
ICGC-ARGO Sanger WGS Somatic Variant Calling Workflow
NextflowAGPL-3.0