idfarbanecha

Pinned Repositories

bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1.7k 96 2k3.4k
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00
pbsim2
PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
Language:C++0 0 00
sbx_kaiju
Kaiju metagenomics classifier for Sunbeam
0 0 00
WAURIS2.0_2018
Language:R0 0 00
assembly_finder
snakemake-powered cli to download genomes using NCBI datasets
Language:Python13 5 30
benchmark-MeSS-CAMISIM
Nextflow pipeline to benchmark MeSS and CAMISIM
Language:Nextflow0 1 01
diag_pipelines
Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.
Language:Python7 2 219
MeSS
Snakemake pipeline for simulating shotgun metagenomic samples
Language:Python22 5 152
nanopore
Language:Nextflow2 3 00

idfarbanecha's Repositories

idfarbanecha/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00
idfarbanecha/pbsim2
PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
Language:C++0 0 00
idfarbanecha/sbx_kaiju
Kaiju metagenomics classifier for Sunbeam
0 0 00
idfarbanecha/WAURIS2.0_2018
Language:R0 0 00