Pinned Repositories
bdv-fusion
Use Big Data Viewer to fuse tile configurations on the fly
bigcat
Collaborative volume annotation and segmentation with BigDataViewer
bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
bigdataviewer-vistools
Helpers to use BigDataViewer as a quick visualization tool in other projects.
BigStitcher
ImgLib2/BDV implementation of Stitching for large datasets
bigwarp
A tool for manual pointwise deformable registration using bigdataviewer.
fiji
A "batteries-included" distribution of ImageJ :battery:
imagej-ops
ImageJ Ops: "Write once, run anywhere" image processing
imglib2
A generic next-generation Java library for image processing
igorpisarev's Repositories
igorpisarev/bigcat
Collaborative volume annotation and segmentation with BigDataViewer
igorpisarev/bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
igorpisarev/BigStitcher
ImgLib2/BDV implementation of Stitching for large datasets
igorpisarev/fiji
A "batteries-included" distribution of ImageJ :battery:
igorpisarev/imagej-ops
ImageJ Ops: "Write once, run anywhere" image processing
igorpisarev/imglib2
A generic next-generation Java library for image processing
igorpisarev/imglib2-algorithm
Image processing algorithms for ImgLib2
igorpisarev/imglib2-cache
Cache interfaces and java.lang.ref based implementation.
igorpisarev/imglib2-realtransform
igorpisarev/label-utilities
Stuff like label interpolation
igorpisarev/label-utilities-n5
igorpisarev/label-utilities-spark
igorpisarev/list-of-update-sites
The update sites ImageJ knows about automatically
igorpisarev/mpicbg
Fiji module for image transformation and related algorithms
igorpisarev/n5
Not HDF5
igorpisarev/n5-blosc
Blosc compression for N5
igorpisarev/n5-hdf5
Best effort N5 implementation on HDF5 files (despite the irony).
igorpisarev/n5-ij
ImageJ convenience layer for N5
igorpisarev/n5-imglib2
igorpisarev/n5-label-multisets
igorpisarev/n5-utils
simple standalone BigDataViewer for multiple N5 (or HDF5) datasets
igorpisarev/n5-zarr
Zarr filesystem backend for N5
igorpisarev/ops-experiments
EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.
igorpisarev/paintera
igorpisarev/paintera-conversion-helper
Script to assist conversion of n5 datasets to paintera-friendly formats
igorpisarev/pom-scijava
Friendly base POM for all SciJava-based software
igorpisarev/pom-scijava-base
Low-level base POM for all SciJava-based software
igorpisarev/saalfx
SaalFX: Extensions and tools for JavaFX, extracted from Paintera
igorpisarev/spark-janelia
scripts for using spark on janelia's cluster
igorpisarev/stitching-spark
Reconstruct big images from overlapping tiled images on a Spark cluster.