ihh

time to larn those machines a thing or two about human nature

UC BerkeleySF Bay Area

Pinned Repositories

abrowse
Multiple sequence alignment browser
Language:JavaScript11 2 144
bbcmicrobot-codec
A wrapper for dasm and @bbcmicrobot
Language:JavaScript10 3 00
bracery
Procedural text generator, somewhat compatible with Tracery
Language:JavaScript20 3 711
dart
DNA, Amino Acid and RNA Tests
Language:C++31 11 115
dnastore
Software for error-tolerant coding of information into DNA sequences using finite-state transducers.
Language:C++12 3 13
gfftools
Perl scripts for working with the GFF format
Language:Perl16 5 07
graphgram
Graph grammar library
Language:JavaScript44 4 52
quaff
FASTA/FASTQ alignment
Language:C++5 7 90
trajectory-likelihood
Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)
Language:C++14 4 11
zoogas
Z00 G45. A simple entropy-maximizing game on a Lotka-Volterra cellular automaton
Language:Java8 4 03

ihh's Repositories

ihh/graphgram
Graph grammar library
Language:JavaScript44 4 52
ihh/bracery
Procedural text generator, somewhat compatible with Tracery
Language:JavaScript20 3 711
ihh/trajectory-likelihood
Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)
Language:C++14 4 11
ihh/abrowse
Multiple sequence alignment browser
Language:JavaScript11 2 144
ihh/carder
Lightweight wrapper to Gajus Kuizinas' Swing for building card-swiping interactive fiction on the web.
Language:JavaScript3 3 12
ihh/bilby
Jax code for functional genomics ML
Language:Python2 1 51
ihh/stockholm-js
Parser for Stockholm format
Language:JavaScript2 3 1
ihh/EvolPairHMM
Evolutionary Pair HMM
Language:Mathematica1 2 0
ihh/ihh.github.io
Holmes lab website
Language:HTML1 3 210
ihh/6502life
Language:JavaScript2 2
ihh/6502wars
6502-based cellular automata
Language:JavaScript3 0
ihh/augurbot
Language:JavaScript4 0
ihh/biochoon
Language:JavaScript2 0
ihh/brokentelephone
Phylogenetic alignment parlor game
Language:Perl3 0
ihh/coarse-indel-models
Coarse-grained approach to evolutionary models involving insertions and deletions (indels)
Language:Mathematica2 0
ihh/flash-attention-jax
Implementation of Flash Attention in Jax
Language:Python1 0
ihh/hornswaggle
Language:JavaScript2 0
ihh/hyena
JAX/Flax implementation of the Hyena Hierarchy
Language:Jupyter Notebook1 0
ihh/ipip
Language:HTML3 0
ihh/jaccuse
J'accuse!
2 0
ihh/JBrowseR-paper
Repo for the paper describing JBrowseR
Language:TeX2 0
ihh/latex-inputs
LaTeX bibliography
2 0
ihh/llm
Access large language models from the command-line
Language:Python1 0
ihh/picaro
Language:JavaScript2 0
ihh/safejax
Serialize JAX, Flax, Haiku, or Objax model params with 🤗`safetensors`
Language:Python1 0
ihh/scallywag
Language:JavaScript1 0
ihh/snowclone
Snowclone scraper script.
Language:JavaScript2 0
ihh/sokoscript
Language:JavaScript2 3
ihh/TheRing
A song about the anti-horror properties of children
1 0
ihh/triax
Language:HTML3 0