/gtex-estrs-paper

Code and analysis for genome-wide analysis of eSTRs in the GTEx cohort

Primary LanguageJupyter Notebook

gtex-estrs-paper

Code and analysis for genome-wide analysis of eSTRs in the GTEx cohort

Folders contain the following:

  • figures: Jupyter notebooks for generating figures
  • str-regression: scripts for eSTR regression analysis (on AWS)
  • snp-regression: scripts for eSNP regression analysis (on AWS)
  • anova: scripts for running eSTR+eSNP ANOVA
  • caviar: scripts for running eSTR+eSNP CAVIAR
  • master: scripts for collecting all eSTR summary statistics
  • mashr: scripts for performing mashR analysis
  • homer-plots: scripts for generating ChIP-seq histograms
  • gwas: scripts for overlapping eSTRs with GWAS hits