illusional
Software Engineer at the Centre for Population Genomics
@populationgenomicsMelbourne, Australia
Pinned Repositories
ALLSorts
ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.
amber
Amber Energy testing
CellRegMap
CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq
immutable-interval-tree
Immutable Interval Tree for Javascript / Typescript
photo-scanning
Scripts to process photo scans
python-cwlgen
Generation of CWL programmatically. Available types: CommandLineTool, Workflow and Requirements
janis
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
illusional's Repositories
illusional/immutable-interval-tree
Immutable Interval Tree for Javascript / Typescript
illusional/photo-scanning
Scripts to process photo scans
illusional/python-cwlgen
Generation of CWL programmatically. Available types: CommandLineTool, Workflow and Requirements
illusional/ALLSorts
ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.
illusional/amber
Amber Energy testing
illusional/CellRegMap
CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq
illusional/CliHelpParser
Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)
illusional/containers-bioinformatics-workshop
UNDER CONSTRUCTION -- Workshop on Singularity Containers for Bioinformatics
illusional/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
illusional/cwl-format
A very opinionated code formatter for CWL
illusional/cwl-svg
A library for generating an interactive SVG visualization of CWL workflows
illusional/cwl-utils
Python 3.6+ utilities for CWL
illusional/cwl-v1.2
Current development CWL v1.2 specification
illusional/cwl-website
www.commonwl.org
illusional/cwltool
Common Workflow Language reference implementation
illusional/family_history_terminology
illusional/fastqe-convert
Convert files to an emoji format. Thinking of changing the name.
illusional/filesystem_spec
A specification that python filesystems should adhere to.
illusional/fit3036
Computer Science Project - Road Surface Area Estimation
illusional/huckleberry
illusional/miniwdl
A static analysis toolkit for the Workflow Description Language
illusional/react-nice-dates
A responsive, touch-friendly, and modular date picker library for React.
illusional/regional_missense_constraint
Code to calculate regional missense constraint
illusional/schema_salad
Semantic Annotations for Linked Avro Data
illusional/seqr
web-based analysis tool for rare disease genomics
illusional/STAR
RNA-seq aligner
illusional/swift-algorithms
illusional/swift-vapor-psql-demo
Demo of Swift Vapor app using pure PostgreSQL
illusional/wdl
Workflow Description Language - Specification and Implementations
illusional/wdl-ide
Rich IDE support for Workflow Description Language