Pinned Repositories
Anet-ImageJ
An ImageJ/FIJI plugin for running Anet, for processing images with ANNA-PALM and other models in ImageJ/FIJI.
ANNA-PALM
Accelerating Single Molecule Localization Microscopy with Deep Learning
Brightfield-Drift-Correction-3D
Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!
CompressedSensingMicroscopy3D
Reconstruction notebooks for the paper "Simple 3D compressed sensing scheme for faster and less phototoxic fluorescence microscopy imaging"
keras
Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano and TensorFlow.
lutorpy
Use torch in python for deep learning.
pySPIRALTAP
Sparse Poisson Intensity Reconstruction ALgorithms
ShareLoc.XYZ
A platform for sharing localization microscopy data.
smlm-file-format
A portable and extendable file format for storing and sharing localization microscopy data.
ZOLA-3D
Zernike Optimized Localization Algorithm for 3D single molecule localizations
imodpasteur's Repositories
imodpasteur/lutorpy
Use torch in python for deep learning.
imodpasteur/ANNA-PALM
Accelerating Single Molecule Localization Microscopy with Deep Learning
imodpasteur/ZOLA-3D
Zernike Optimized Localization Algorithm for 3D single molecule localizations
imodpasteur/Brightfield-Drift-Correction-3D
Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!
imodpasteur/CompressedSensingMicroscopy3D
Reconstruction notebooks for the paper "Simple 3D compressed sensing scheme for faster and less phototoxic fluorescence microscopy imaging"
imodpasteur/keras
Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano and TensorFlow.
imodpasteur/pySPIRALTAP
Sparse Poisson Intensity Reconstruction ALgorithms
imodpasteur/Anet-ImageJ
An ImageJ/FIJI plugin for running Anet, for processing images with ANNA-PALM and other models in ImageJ/FIJI.
imodpasteur/smlm-file-format
A portable and extendable file format for storing and sharing localization microscopy data.
imodpasteur/ShareLoc.XYZ
A platform for sharing localization microscopy data.
imodpasteur/ArduinoCompressedSensing
A compressed sensing plugin for MicroManager to perform compressed sensing acquisitions
imodpasteur/mnist-deep-learning-tutorial
imodpasteur/shareloc-collection
RDF Collection for ShareLoc.XYZ
imodpasteur/LoopExtrusion
A tool to simulate loop extrusion in chromatin
imodpasteur/QuickPALM
A 3D real-time PALM/STORM image processing plugin for ImageJ
imodpasteur/RNNtrajAnalysis
imodpasteur/sagenb
Sage Notebook for super-resolution imaging automation
imodpasteur/VoroQuant
A 3D-voronoi-based python program to quantify SMLM data
imodpasteur/DeepCell
imodpasteur/Sabate_et_al_TAD_Anchors
Python scripts to analyze loop extrusion from microscopy images and simulations
imodpasteur/shareloc-utils
Utility tools for ShareLoc.XYZ
imodpasteur/smlm-viewer
imodpasteur/TaggedSpot2CSV
Convert Tagged Spot File (.tsf from MicroManager) to Comma Separated Values file(.csv for thunderSTORM)
imodpasteur/thunderstorm
ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging