/cellstitch

Primary LanguageJupyter Notebook

CellStitch: 3D Cellular Segmentation via Optimal Transport

Installation

git clone https://github.com/imyiningliu/cellstitch.git
cd cellstitch
pip install -e .

Instructions

Our implementation of the algorithm is in ./cellstitch/; you can git clone our repository and install the package locally. Example usage can be found here.