Pinned Repositories
chaise
An adaptive user interface for the Deriva platform.
deriva-commons
Common data models, spreadsheets and other
deriva-py
Python modules for the DERIVA platform
ermrest
ERMrest (rhymes with "earn rest") is a general relational data storage service for web-based, data-oriented collaboration.
ermrestjs
ERMrest client library in JavaScript
gudmap-rbk
Public wiki and information regarding GUDMAP/RBK
hatrac
Simple object storage for collaborations
openseadragon-viewer
2D viewer with openseadragon
synspy
Synaptic segmentation and visualization with fluorescence microscopy
volspy
Volumetric image visualization using vispy
ISI Informatics Systems Research Division's Repositories
informatics-isi-edu/deriva-site-template
Basic Jekyll template for DERIVA deployments
informatics-isi-edu/mesh-viewer
3D mesh viewer
informatics-isi-edu/SMITE_FLIM_Analysis
FLIM Matlab Analysis Programs
informatics-isi-edu/isrd-github-workflows
Common GitHub workflows
informatics-isi-edu/deriva-imaging-pipeline
Tools and configuration for the DERIVA imaging pipeline
informatics-isi-edu/facebase-ml
Repository for deriva-ml classes extended for the FaceBase data repository
informatics-isi-edu/facebase-ml-exec
Repository for scripts, notebooks and workflows for FaceBase ML
informatics-isi-edu/eye-ai-tools
Misc. tools and programs for Eye-AI ML project.
informatics-isi-edu/viz-3d
3D visualization tools
informatics-isi-edu/microscopy
A microscopy image management solution based on the ERMrest service.
informatics-isi-edu/pycro-manager
Python control of micro-manager for customized data acquisition
informatics-isi-edu/facebase-ml-www
FaceBase ML static site
informatics-isi-edu/deriva-react-template
Template for React applications
informatics-isi-edu/deriva-client-bundle
Binary distributions of DERIVA Client Tools
informatics-isi-edu/deriva-client
An application suite of Python-based client software for use with the DERIVA platform.
informatics-isi-edu/deriva-catalog-manage
Deriva catalog management using deriva-py
informatics-isi-edu/fishspy
Video analysis for zebrafish behavior
informatics-isi-edu/synspy
Synaptic segmentation and visualization with fluorescence microscopy
informatics-isi-edu/volspy
Volumetric image visualization using vispy
informatics-isi-edu/synapse-viewer
plotting viewer with plotly.js for synapse dataset
informatics-isi-edu/gudmap-rbk
Public wiki and information regarding GUDMAP/RBK
informatics-isi-edu/deriva-ui-test-data
The data that can be used for testing deriva components
informatics-isi-edu/iobox
Extract, Transform, Load (ETL) utilities for ERMrest+Hatrac
informatics-isi-edu/NDTiffStorage
N-dimensional, multiresolution file format for Micro-Manager
informatics-isi-edu/deriva-client-bundle-docker
Docker images for building platform specific bundles of deriva-client
informatics-isi-edu/mmCoreAndDevices
Micro-Manager's device control layer, written in C++
informatics-isi-edu/frictionless-framework
Data management framework for Python that provides functionality to describe, extract, validate, and transform tabular data
informatics-isi-edu/webpy
web.py is a web framework for python that is as simple as it is powerful.
informatics-isi-edu/deriva-platform
The Discovery Environment for Relational Information and Versioned Assets (DERIVA) platform is an asset management system designed to support scientific collaboration through the full lifecycle of data - from early experiment design, to data acquisition, analyses and ultimately publication.
informatics-isi-edu/pagestudy-www