Pinned Repositories
chaise
An adaptive user interface for the Deriva platform.
deriva-commons
Common data models, spreadsheets and other
deriva-py
Python modules for the DERIVA platform
ermrest
ERMrest (rhymes with "earn rest") is a general relational data storage service for web-based, data-oriented collaboration.
ermrestjs
ERMrest client library in JavaScript
gudmap-rbk
Public wiki and information regarding GUDMAP/RBK
hatrac
Simple object storage for collaborations
openseadragon-viewer
2D viewer with openseadragon
synspy
Synaptic segmentation and visualization with fluorescence microscopy
volspy
Volumetric image visualization using vispy
ISI Informatics Systems Research Division's Repositories
informatics-isi-edu/deriva-docs-docker
Docker image used for building the DERIVA platform documentation suite.
informatics-isi-edu/deriva-commons
Common data models, spreadsheets and other
informatics-isi-edu/TeensyTimerTool
Generic Interface to Teensy Timers
informatics-isi-edu/iobox-win32
A prototypical win32 implementation of the IObox.
informatics-isi-edu/micro-manager
Microscope control and image acquisition integrated with ImageJ.
informatics-isi-edu/ioboxd
REST Web Service Interface for IOBox
informatics-isi-edu/gudmap-plots
Custom plotly apps for GUDMAP. Eventually some of this will move to a generic plot repo.
informatics-isi-edu/synapse-client
Wrapper application for easy installation of Synapse application software
informatics-isi-edu/Convert3D
Convert3D from http://www.itksnap.org/pmwiki/pmwiki.php?n=Convert3D.Downloads with changes from BIC, updated to ITKv5
informatics-isi-edu/PDB-Dev-Docs
Documentations and Instructions for PDB-Dev
informatics-isi-edu/cx_Freeze
Scripts and modules for freezing Python scripts into executables.
informatics-isi-edu/log-analysis
Analysis logs generated by Deriva components
informatics-isi-edu/deriva-tutorial-www
Static site pages for tutorial.derivacloud.org
informatics-isi-edu/pbc-pride-2020
Schema evolution scripts and documents for the PBC use case reported in SSDBM 2020
informatics-isi-edu/deriva-jbrowse-plugin
jbrowse plugin for reading tracks from the FaceBase catalog
informatics-isi-edu/nsf-core
Repo for NSF Learning Based Optimization project.
informatics-isi-edu/betacell-consortium
informatics-isi-edu/gpcr-www
Static website files related to the gpcr project
informatics-isi-edu/line-viewer
plotting line charts using plotly
informatics-isi-edu/sec-viewer
graphing viewer using plotly.js for SEC dataset in cdf format
informatics-isi-edu/nih-commons-www
jekyll/static site build for nih commons demo
informatics-isi-edu/synapse_datasets
Deriva-py code to manipulate synapse datasets.
informatics-isi-edu/X
The X Toolkit
informatics-isi-edu/rbk-upload
RBK File Upload Utility
informatics-isi-edu/identifiers
Deriva tools and utilities for interfacing with permanent identifiers such as DataCite
informatics-isi-edu/fcs-viewer
graphing viewer using plotly.js
informatics-isi-edu/fcsparser
a python parser for reading and writing fcs files supporting fcs 2.0, 3.0, 3.1
informatics-isi-edu/openseadragon
An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.
informatics-isi-edu/protwis
informatics-isi-edu/cel-viewer-in-shiny
graphing viewer using plotly.R, shiny for gene expression datasets