This package contains a set of standard teal modules to be used with CDISC data in order to generate many of the standard outputs used in clinical trials.
These modules include, but are not limited to:
- Data visualizations:
- Forest plots (
tm_g_forest_rsp()/tm_g_forest_tte()) - Line plots (
tm_g_lineplot()) - Kaplan-Meier plots (
tm_g_km()) - ...
- Forest plots (
- Statistical model fits:
- MMRM (
tm_a_mmrm()) - Logistic regression (
tm_t_logistic()) - Cox regression (
tm_t_coxreg()) - ...
- MMRM (
- Summary tables:
- Unique patients (
tm_t_summary()) - Exposure across patients (
tm_t_exposure()) - Change from baseline for parameters (
tm_t_summary_by()) - ...
- Unique patients (
- Patient-level profile modules:
- Table of basic information about chosen patient (
tm_t_pp_basic_info()) - Plot of patient vitals over time (
tm_g_pp_vitals()) - General timeline for individual patients (
tm_g_pp_patient_timeline()) - ...
- Table of basic information about chosen patient (
Most modules in the package are implemented using functions from the R package tern in order to produce their output.
Please see the Teal Gallery and TLG Catalog for examples of shiny apps created using modules from this package.
install.packages('teal.modules.clinical')Alternatively, you might want to use the development version.
# install.packages("pak")
pak::pak("insightsengineering/teal.modules.clinical")To understand how to use this package, please refer to the Getting Started article, which provides multiple examples of code implementation.
You can try out the package without installing it in the Shinylive:
If you encounter a bug or have a feature request, please file an issue. For questions, discussions, and staying up to date, please use the teal channel in the pharmaverse slack workspace.
This package is the result of the joint efforts of many developers and stakeholders. We would like to thank everyone who has contributed so far!
