intbio

Pinned Repositories

Armeev_et_al_2021
Language:HTML3 3 05
gmx_protocols
Protocols for running MD simulations in Gromacs
9 2 04
gromacs_ff
Trusted force field files for gromacs
Language:Rich Text Format38 6 512
histonedb
Language:Jupyter Notebook2 1 52
IntBioEdu
Educational notes on Integrative Biology: computer science/data analysis/physics for biologists and biology for students with technical backgounds.
Language:Jupyter Notebook2 7 04
IT_notes
Information technology notes and code snippets useful for computational biology.
Language:HTML2 4 02
MolModEdu
Educational Notes on Molecular Modeling
Language:Jupyter Notebook9 6 27
pynucl
A library for comprehensive analysis of nucleosome structures
Language:Python2 3 02
pypkg_example
This is an example of creating and developing a python package, deploying it to anaconda, and using GitHub actions for continuous testing and delivery.
Language:Python2 2 02
vmd-conda
Conda recipe to compile VMD using conda
Language:Shell21

intbio's Repositories

intbio/gromacs_ff
Trusted force field files for gromacs
Language:Rich Text Format38 6 512
intbio/gmx_protocols
Protocols for running MD simulations in Gromacs
9 2 04
intbio/Armeev_et_al_2021
Language:HTML3 3 05
intbio/histonedb
Language:Jupyter Notebook2 1 52
intbio/IntBioEdu
Educational notes on Integrative Biology: computer science/data analysis/physics for biologists and biology for students with technical backgounds.
Language:Jupyter Notebook2 7 04
intbio/IT_notes
Information technology notes and code snippets useful for computational biology.
Language:HTML2 4 02
intbio/2021_crispr_gen_circuits
Language:Jupyter Notebook1 1 00
intbio/2022_synbio_webapp
Language:Jupyter Notebook1 2 00
intbio/grant_2018_RNFmoluch
Language:Jupyter Notebook1 2 130
intbio/PyNAMod
The aim of this project is to provide a set of python tools to perform modelling of various DNA structures
Language:Python1 3 01
intbio/theses
Bachelor, Master, PHD theses from members of IntBio Group
0 4 00
intbio/2024_chromatin_sirius
Language:Makefile
intbio/2024_chromprot
Language:JavaScript
intbio/2024_Kosarim_H2A.J
intbio/2024_TRAIL_MD
MD simulations of TRAIL-based systems
intbio/DrSciThesis
Language:TeX
intbio/Fedulova_et_al_2024
Language:JavaScript
intbio/gmx_template_for_nmr
Workflow template for MD preparation and production
Language:Jupyter Notebook2 0
intbio/grant_2023_RNFmoluch
Мультимасштабное моделирование нуклеосомной структуры хроматина как ключ к пониманию работы геномов эукариот
Language:JavaScript
intbio/intbio.github.io
Language:SCSS1
intbio/Kosarim_et_al_2022
Supplement to the article "Analysis of ion atmosphere around nucleosomes using supercomputer MD simulations"
Language:Jupyter Notebook2 0
intbio/Kovalev_Practice
Language:Jupyter Notebook2 0
intbio/mm_2024
Language:Jupyter Notebook
intbio/mm_hse_2023
Language:Jupyter Notebook1
intbio/mm_hse_2024
Language:Jupyter Notebook
intbio/Oleinikov_et_al_2023
Supplementary material
intbio/RNF_19-74-30003
Language:HTML
intbio/seqplot
Making plots with x-axis annotated with an image of a protein/DNA sequence or MSA
Language:Jupyter Notebook2 01
intbio/spb_2023
Language:Jupyter Notebook
intbio/Tetrasome_MD_2024
Language:HTML