Pinned Repositories
Armeev_et_al_2021
gmx_protocols
Protocols for running MD simulations in Gromacs
gromacs_ff
Trusted force field files for gromacs
histonedb
IntBioEdu
Educational notes on Integrative Biology: computer science/data analysis/physics for biologists and biology for students with technical backgounds.
IT_notes
Information technology notes and code snippets useful for computational biology.
MolModEdu
Educational Notes on Molecular Modeling
pynucl
A library for comprehensive analysis of nucleosome structures
pypkg_example
This is an example of creating and developing a python package, deploying it to anaconda, and using GitHub actions for continuous testing and delivery.
vmd-conda
Conda recipe to compile VMD using conda
Integrative Biology Group's Repositories
intbio/gmx_protocols
Protocols for running MD simulations in Gromacs
intbio/MolModEdu
Educational Notes on Molecular Modeling
intbio/pypkg_example
This is an example of creating and developing a python package, deploying it to anaconda, and using GitHub actions for continuous testing and delivery.
intbio/vmd-conda
Conda recipe to compile VMD using conda
intbio/BioInfEdu
Educational Notes on Bioinformatics
intbio/seq_tools
A python package for visualization and manipulation of sequences and alignments
intbio/2019_igem
intbio/2018_prot_sim_RV
intbio/biopython
Official git repository for Biopython (originally converted from CVS)
intbio/CASSET_gRNA_designer
A library for gRNA design (for both single Cas and split-systems)
intbio/conda-package-publish-action
Github Action to deploy conda package to Anaconda repository
intbio/cpedb
intbio/Cy_model
Краткая сводка информации по циановым меткам, которые мы используем
intbio/distiller-nf
a modular Hi-C mapping pipeline
intbio/DNA_tools
Tools to analyse and manipulate DNA conformation
intbio/DNAtools
intbio/github-tag-action
A Github Action to tag a repo on merge.
intbio/Hi-C_analysis_examples
intbio/hic
Analysis of Chromosome Conformation Capture data (Hi-C)
intbio/histoneppidb
intbio/hydroid-conda
HYDROID recipe for Anaconda
intbio/LaTeX-Thesis-Template-MSU
LaTeX-template for russian Phd thesis
intbio/Moscow_iGEM2020
Kinetic model of the detection system with CasX
intbio/pymolint
A python package to characterise molecular interactions at atomic level in PDB structures and MD simulations
intbio/pytexshade-conda
intbio/sci_writing
Notes and examples on how to write papers and theses
intbio/seq_tools-conda
Conda recipe for seq_tools
intbio/seqaln_tools
Different python libraries that automate downloading, filtering and analysis of sequences and sequence alignments
intbio/soph_labs
Практика студентов второго курса в группе интегративной биологии
intbio/ssh-action
GitHub Actions for executing remote ssh commands.