histoneppidb
Description
Histone Protein Protein Interactions Database - a database that collects publicly available datasets of experimental and predicted evidence about histone – non-histone interactions from STRING, BioGRID, and IntAct. In DB are used both updated and previous HGNC symbols for all human histone genes. Protein-protein interactions are aggregated for histone variants. Also, DB contains a designed functional hierarchical classification for chromatin proteins and PDB ID to the related structures. The databased are linked with Histone variants from HistoneDB 2.0 and with structural information from NuclDB. This database contributes to revealing of a complex network of interactions between nucleosomes and chromatin proteins, many of which are specific to the histone composition of the nucleosome.
Release
March 2021: HistonePPI DB version 1 (String v11, BioGRID v4.3., IntAct v 4.2.16??)
How to cite:
Gribkova A. K., Shaytan A. K. Construction and analysis of an interactome between nucleosomes and chromatin proteins // FEBS open bio. — 2019. — Vol. 9, no. sup1. — P. 393–393.
Contributors
- Anna Gribkova, Grigoriy Armeev, Alexey Shaytan