Graphical User Interface for HYDROID - A Python package for analyzing hydroxyl-radical footprinting experiments of protein-DNA complexes.
HYROID_GUI is a sister add-on package that wraps some basic gel lane quantification functionality into a more user friendly graphical interface.
Please, refer to the HYDROID package web-page https://github.com/ncbi/HYDROID for the detailed description of the HYDROID approach.
The manual for HYDROID_GUI is provided as a video tutorial (see below).
HYDROID_GUI allows user to
- open lane profile files extracted from gel images via ImageJ (see video tutorial)
- perform peak detection, naming and quantification for multiple lanes simultaneously, see HYDROID workflow for details
- export results directly to a spreadsheet editor or scv files
- save config files for later use with HYDROID Python scripting interface.
HYDROID_GUI gui is tested to work on python 2.7 through conda environment manager, it runs on Linux (ubuntu 16.04, 14.04 tested), Windows and MacOS
- conda install -c hydroid hydroid_gui -c conda-forge
- HYDROID_GUI