Pinned Repositories
bam.iobio.io
http://bam.iobio.io
clin.iobio
Clin.iobio - Workflow and reporting for iobio variant analysis pipeline
example-bamViewer
(NO LONGER SUPPORTED) Simple example to make your first web app with iobio
gene.iobio
Gene.iobio vue
genepanel.iobio
Genepanel.iobio: generate list of genes based on suspected conditions and phenotypes.
iobio-gru-backend
iobio.js
Client side iobio library for building and executing iobio commands
iobio.viz
Visualization and charting JS library for streaming genomic data
minion
Server wrapper that turns command line tools into web services
vcf.iobio.io
iobio's Repositories
iobio/gene.iobio
Gene.iobio vue
iobio/bam.iobio.io
http://bam.iobio.io
iobio/iobio.viz
Visualization and charting JS library for streaming genomic data
iobio/clin.iobio
Clin.iobio - Workflow and reporting for iobio variant analysis pipeline
iobio/iobio-gru-backend
iobio/oncogene
Cancer tailored version of gene.iobio
iobio/cohort-gene
iobio/rnasplice.iobio
Visualize short-read RNA splice events
iobio/diff-express.viz
An application for genetic differential expression dataset visualization.
iobio/pheno-plus
SMART on FHIR EMR project for retrieving Human Phenotype Ontology terms directly from medical record notes.
iobio/pheno_matcher_be_rust
Backend for the SimPheny project. Implemented in Rust for speed.
iobio/SimPheny.iobio
A web application for patient to patient phenotype matching.
iobio/sv.iobio
structural variant visualization application
iobio/aws-side-quest
iobio/bigwig-depther-rs
iobio/calypso_pipeline
iobio/gene.model.db
Import refseq gene model (gff3) to sqlite3 db for gene.iobio and update with xref and canonical infor for transcripts
iobio/gene_phenotype_associations
Python scripts to load gene-to-phenotype db to supply gene to HPO terms (phenotypes) and gene to disease assocations.
iobio/geneinfo.db
This is project for rebuilding gene model by python
iobio/gru-aws-volume-manager
iobio/gru-testing
iobio/iobio-api-client
iobio/iobio-charts
iobio/patient_portal
This is a patient portal project for Calypso and UDN
iobio/pheno-plus-whitelist
A background service that keeps a whitelist json for our pheno+ applicaiton up to date. This is a service for testing only.
iobio/phenomatcher
iobio version of phenomatcher tool
iobio/Phenotype-extractor
Extract phenotypes/ conditions from clinical notes
iobio/sv.iobio.be
Backend services for testing & stand alone service to sv.iobio
iobio/taxonomer.iobio
iobio/timeline