iobio/clin.iobio

Issues

• Update code to change 'unknown-sig' to 'uncertain-sig' for variant interpretation.

  #495 opened a year ago by tonydisera
  0

• When running clin.iobio using a configuration file it freezes on Review variants

  #487 opened 2 years ago by JasperO98
  3

• Launch stand-alone clin.iobio with URL parameters for variant and alignment files (like gene.iobio)

  #484 opened 2 years ago by tonydisera
  0

• When reloading saved json analysis (standalone clin.iobio), the findings page shows confusing message about reviewing variants

  #483 opened 2 years ago by tonydisera
  0

• Up gene cap in clin.iobio genepanel

  #477 opened 2 years ago by AlistairNWard
  0

• HPO gene selection fails (genepanel)

  #476 opened 2 years ago by AlistairNWard
  1

• Add the clinical note to "select phenotype" input when launched from mosaic

  #416 opened 3 years ago by adityaekawade
  0

• Download charts - reports page

  #426 opened 3 years ago by adityaekawade
  0

• Add Analysis

  #409 opened 3 years ago by AlistairNWard
  0

• When on HPO tab, just show HPO filtered genes

  #408 opened 3 years ago by AlistairNWard
  0

• Rank phenotypes

  #420 opened 3 years ago by AlistairNWard
  0

• Improve phenotypes in Report

  #423 opened 3 years ago by AlistairNWard
  0

• Make case summary editable

  #422 opened 3 years ago by AlistairNWard
  1

• Use GRCh38 demo data, for trio (not quad). Update case summary to "three individuals"

  #468 opened 3 years ago by tonydisera
  0

• Demo data should pull alignment and vcf stats from real-time data, not static hard-coded values.

  #460 opened 3 years ago by tonydisera
  2

• The QC page fails to load bam stats (intermittent)

  #458 opened 3 years ago by tonydisera
  1

• Make ped file input optional

  #464 opened 3 years ago by mvelinder
  0

• Adding notes to a variant causes problem

  #463 opened 3 years ago by AlistairNWard
  0

• Highlight the need to select genome build when inputting own data

  #462 opened 3 years ago by mvelinder
  0

• Import variants from VCF does not work (and probably CSV also)

  #455 opened 3 years ago by mvelinder
  1

• Loading ped from URL doesn't work

  #444 opened 3 years ago by mvelinder
  1

• Ability to import VCFs from URL

  #453 opened 3 years ago by mvelinder
  0

• Genepanel - add tooltip if term not analyzed

  #451 opened 3 years ago by AlistairNWard
  0

• WARS1 not recognized in demo data

  #446 opened 3 years ago by mvelinder
  0

• Phenotype terms prepopulated when loading own data

  #442 opened 3 years ago by mvelinder
  4

• Refine text for collaboration form

  #440 opened 3 years ago by AlistairNWard
  1

• Removing all inputs fails (genepanel)

  #433 opened 3 years ago by AlistairNWard
  0

• Genepanel - manually add genes

  #414 opened 3 years ago by AlistairNWard
  3

• Issues with HPO updates

  #405 opened 3 years ago by AlistairNWard
  5

• Indicated when pulling from multiple vcf files

  #450 opened 3 years ago by AlistairNWard
  0

• For paper - Demo data is a quad

  #449 opened 3 years ago by AlistairNWard
  0

• Add support for VCF files (variant lists) in public-facing clin

  #448 opened 3 years ago by mvelinder
  0

• Add support for VCF files (variant lists) in public-facing clin

  #447 opened 3 years ago by mvelinder
  0

• Removing terms from a clinical note is not straightforward

  #445 opened 3 years ago by mvelinder
  0

• Duplicate "New note" shows up after adding an empty note

  #443 opened 3 years ago by mvelinder
  0

• Fail to save gene set (genepanel)

  #441 opened 3 years ago by AlistairNWard
  1

• Visualizations of gene results (genepanel connection)

  #401 opened 3 years ago by AlistairNWard
  28

• Overwrite the gene set in Mosaic from genepanel.

  #419 opened 3 years ago by adityaekawade
  1

• Card styling

  #421 opened 3 years ago by AlistairNWard
  6

• Gene review (phenotypes)

  #415 opened 3 years ago by AlistairNWard
  4

• Save analysis isn't clickable

  #424 opened 3 years ago by AlistairNWard
  1

• Gene panel HPO help messages

  #425 opened 3 years ago by AlistairNWard
  8

• Genepanel - make tabs clearer

  #413 opened 3 years ago by AlistairNWard
  0

• Deselect all - clinical note

  #404 opened 3 years ago by AlistairNWard
  4

• Genepanel - HPO gene specificity chart should be continuous

  #412 opened 3 years ago by AlistairNWard
  2

• Improved look when data is missing (genepanel)

  #406 opened 3 years ago by AlistairNWard
  0

• Data is loaded green bar

  #407 opened 3 years ago by AlistairNWard
  0

• Option to update or save as new analysis

  #397 opened 3 years ago by adityaekawade
  3

• Save analysis

  #410 opened 3 years ago by AlistairNWard
  0

• Update readme to add local installation steps

  #395 opened 4 years ago by adityaekawade
  1