Pinned Repositories
BamChecker
Tool for checking Mosaik BAM integrity
bamtools
C++ API & command-line toolkit for working with BAM data
bosCoPipe
Provides scripting for alignment and variant calling
configurationClass
Library for handling tool and pipeline configuration files
gene_coverage
Get mean coverage for a list of regions
geneCov
Get mean coverage for a list of regions
mutateRef
Mutate reference sequence
mutatrix
genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms
vcfCTools
C++ implementation of vcfPytools. The layout of the code is based on bamtools by Derek Barnett.
vcfPytools
vcf file manipulation
AlistairNWard's Repositories
AlistairNWard/vcfPytools
vcf file manipulation
AlistairNWard/vcfCTools
C++ implementation of vcfPytools. The layout of the code is based on bamtools by Derek Barnett.
AlistairNWard/BamChecker
Tool for checking Mosaik BAM integrity
AlistairNWard/bosCoPipe
Provides scripting for alignment and variant calling
AlistairNWard/mutateRef
Mutate reference sequence
AlistairNWard/bamtools
C++ API & command-line toolkit for working with BAM data
AlistairNWard/configurationClass
Library for handling tool and pipeline configuration files
AlistairNWard/gene_coverage
Get mean coverage for a list of regions
AlistairNWard/geneCov
Get mean coverage for a list of regions
AlistairNWard/mutatrix
genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms
AlistairNWard/premo
"pre-Mosaik" application to estimate suitable alignment parameters
AlistairNWard/scissors
Split-read aligner
AlistairNWard/test_bam
AlistairNWard/trio-launcher
AlistairNWard/wham
Structural variant detection and association testing