iosonofabio
Physics, bioinformatics, virology, evolution, data science, and bioengineering. I usually code in Python, C++, and Javascript.
UNSW SydneySydney, Australia
Pinned Repositories
htseq
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
bi2-ss12-p6
Project 6 for Bioinformatics II SS12 Uni-Tübingen
hivwholeweb
Web application for deep sequencing on longitudinal HIV-1 samples from patients.
lshknn
k nearest neighbor (KNN) graphs via Pearson correlation distance and local sensitive hashing (LSH).
organic-box-factory
Docker/Singularity containers for high-throughput sequencing pipelines in the cloud and on the ground
pysang
A Sanger chromatograph viewer.
seqanpy
Fast pairwise sequence alignment using SeqAn, in Python.
singlet
Single cell RNA Seq data analysis with quantitative phenotypes
slmpy
Smart Local Moving community detection algorithm in Python and C++11/14
virtual_gamepad
You sometimes need to convince a video game that you own a gamepad...
iosonofabio's Repositories
iosonofabio/bi2-ss12-p6
Project 6 for Bioinformatics II SS12 Uni-Tübingen
iosonofabio/pysang
A Sanger chromatograph viewer.
iosonofabio/zotero
iosonofabio/zotero-connectors
Chrome and Safari connectors for Zotero
iosonofabio/betatree
Generate and analyze beta coalescent trees
iosonofabio/iPyMol
Control PyMol sessions via iPython
iosonofabio/ls_ill
A program in MATLAB to handle and analyze static and dynamic light scattering data.
iosonofabio/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
iosonofabio/scanlag