iosonofabio
Physics, bioinformatics, virology, evolution, data science, and bioengineering. I usually code in Python, C++, and Javascript.
UNSW SydneySydney, Australia
Pinned Repositories
htseq
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
bi2-ss12-p6
Project 6 for Bioinformatics II SS12 Uni-Tübingen
hivwholeseq
Data processing pipeline for HIV next-gen sequencing
hivwholeweb
Web application for deep sequencing on longitudinal HIV-1 samples from patients.
lshknn
k nearest neighbor (KNN) graphs via Pearson correlation distance and local sensitive hashing (LSH).
organic-box-factory
Docker/Singularity containers for high-throughput sequencing pipelines in the cloud and on the ground
pysang
A Sanger chromatograph viewer.
seqanpy
Fast pairwise sequence alignment using SeqAn, in Python.
singlet
Single cell RNA Seq data analysis with quantitative phenotypes
virtual_gamepad
You sometimes need to convince a video game that you own a gamepad...
iosonofabio's Repositories
iosonofabio/virtual_gamepad
You sometimes need to convince a video game that you own a gamepad...
iosonofabio/wrecked
Find the way out of the wreck.
iosonofabio/compressed_atlas_organs_organisms
Compressed cell atlas across organs and organisms
iosonofabio/aciteseq
iosonofabio/biopython
Official git repository for Biopython (converted from CVS)
iosonofabio/cellprofiler_PKGBUILDs
A bunch of PkGBUILD files to install cellprofiler on arch
iosonofabio/celltypeevo
Cell type evolution
iosonofabio/deconvall
iosonofabio/dengue_children
Some work on dengue children
iosonofabio/denv_newadults
iosonofabio/esmplayground
Just a little playing around with Facebook's ESM models.
iosonofabio/fabikb
Just another custom split ergo-ortho ~40% keyboard
iosonofabio/fabiTEM
Ortho-ergo split keyboard variation on the TOTEM
iosonofabio/fabiwubbo
38-key split keyboard: a variation of the Wubbo
iosonofabio/freebayes
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
iosonofabio/goatools
Python library to handle Gene Ontology (GO) terms
iosonofabio/igraph
Library for the analysis of networks
iosonofabio/igraph.org
igraph.org web site
iosonofabio/image-seq
iosonofabio/introduction_biomedical_data_science
Introductory text to biomedical data science
iosonofabio/jupyterchat
A simple chatbot for Juptyer.
iosonofabio/lung_multiomics
Some single cell multiomics
iosonofabio/lung_neonatal_endothelial
Code for the single cell neonatal lung endothelial cell paper
iosonofabio/microner
iosonofabio/pydoctor
This is pydoctor, an API documentation generator that works by static analysis.
iosonofabio/python-igraph
Python interface for igraph
iosonofabio/rigraph
igraph R package
iosonofabio/SARS-CoV-2_check_primers
iosonofabio/scipy
SciPy library main repository
iosonofabio/zaninilab
The Zanini lab website