Pinned Repositories
fhir-populator
A tool to load a lot of FHIR resources from the Simplifier into a "naked" FHIR server and rewrite the version corresponding to the package.json!
fhir-term-samples
mimic2fhir
mimic2fhir converts data from MIMIC-III database (PostgreSQL) to HL7 FHIR resources.
mimic4fhir
mimic4fhir converts data from MIMIC IV database (PostgreSQL) to HL7 FHIR R4 resources or the German Medical Informatics Initiative core data sets.
oncotree-fhir
Oncotree as a FHIR CodeSystem
ontoserver-keycloak
"The book" on configuring Keycloak to work with Ontoserver
Synthea-MII-KDS
TermiCron
TermiCron is a system to synchronize terminology with metadata repositories (MDRs).
TerminoDiff
Semantic Diff of HL7 FHIR CodeSystem resources
TermServerDFNProxy
IT Center for Clinical Research - Universität zu Lübeck's Repositories
itcr-uni-luebeck/mimic2fhir
mimic2fhir converts data from MIMIC-III database (PostgreSQL) to HL7 FHIR resources.
itcr-uni-luebeck/ontoserver-keycloak
"The book" on configuring Keycloak to work with Ontoserver
itcr-uni-luebeck/oncotree-fhir
Oncotree as a FHIR CodeSystem
itcr-uni-luebeck/FHIRLock
This project adds authorization functionality to the HAPI-FHIR-Server. It's based on the JPA server example provided by HAPI. The access control by authorization is added as an additional layer in form of an interceptor. It uses an external policy service built with Java Spark and a MongoDB as policy storage for evaluation.
itcr-uni-luebeck/artdecor-vs-to-cs
convert ArtDecor ValueSets to FHIR CodeSystems that contain the codes that have been selected in the respective valueset
itcr-uni-luebeck/AutomatedStorageSystemTestProtocol
This repository provides our generic test protocol for the integration test of ASS.
itcr-uni-luebeck/fhir2emx
FHIR2EMX is a webbased Tool to convert HL7 FHIR Questionnaires (STU 3) into MOLGENIS EMX Tables.
itcr-uni-luebeck/MappathonValidatorClient
This project provides a Java Client for the Mappathon Validator Service. There are two ways to integrate the client into your matching pipeline.
itcr-uni-luebeck/MDRCupid
MDRCupid - A Configurable Metadata Matching Toolbox
itcr-uni-luebeck/metacheck-core
This project contains a core library to validate metadata quality.
itcr-uni-luebeck/mirth-connect-docker
Mirth-Connect Docker container (+ Mysql container + PHPMyAdmin container)
itcr-uni-luebeck/odm2fhir
This repository contains a single XSLT file to transform CDISC ODM files to a HL7 FHIR Bundle. The current used versions are ODM 1.3.2 and FHIR STU3.
itcr-uni-luebeck/odm2samply
This repository contains XSLT files to transform CDISC ODM files to Samply.MDR Namespace XML. The current used version is ODM 1.3.2.
itcr-uni-luebeck/ROTATION
The smart editoR fOr sTandardised dAta TransformatION uses HL7 FHIR resources to define transformations rules based on matched metadata.
itcr-uni-luebeck/synthea
Synthetic Patient Population Simulator
itcr-uni-luebeck/synthea-international
Synthea metadata and configuration files for international locations