Pinned Repositories
canproco
Code for preprocessing the CanProCo brain and spinal cord dataset
ivadomed
Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.
model-seg-dcm
Segmentation of lesions on MRI scans in patients with Degenerative Cervical Myelopathy (DCM)
model-spinal-rootlets
Deep-learning based segmentation of the spinal nerve rootlets
model_seg_gm-wm_t2star_7t_unet2d-multiclass
A deep learning model that allows robust SC/GM multi-class segmentation based on ultra-high resolution 7T T2*-w MR images
model_seg_sci
Deep-learning based segmentation of the spinal cord and intramedually lesions in traumatic and non-traumatic SCI
ms-challenge-2021
MS segmentation challenge
ms-lesion-agnostic
Deep Learning contrasts "agnostic" tool for MS lesion segmentation in the spinal cord
multimodal-registration
Repository for training and using a contrast agnostic registration model based on the work done in SynthMorph. The contrast agnostic registration model may later be used in IvadoMed’s pipeline.
utilities
Repository containing utility scripts for handling various aspects in a DL model training pipeline
ivadomed's Repositories
ivadomed/ivadomed
Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.
ivadomed/model_seg_sci
Deep-learning based segmentation of the spinal cord and intramedually lesions in traumatic and non-traumatic SCI
ivadomed/ms-challenge-2021
MS segmentation challenge
ivadomed/multimodal-registration
Repository for training and using a contrast agnostic registration model based on the work done in SynthMorph. The contrast agnostic registration model may later be used in IvadoMed’s pipeline.
ivadomed/utilities
Repository containing utility scripts for handling various aspects in a DL model training pipeline
ivadomed/model-spinal-rootlets
Deep-learning based segmentation of the spinal nerve rootlets
ivadomed/ms-lesion-agnostic
Deep Learning contrasts "agnostic" tool for MS lesion segmentation in the spinal cord
ivadomed/canproco
Code for preprocessing the CanProCo brain and spinal cord dataset
ivadomed/MetricsReloaded
A fork of the Project-MONAI/MetricsReloaded repo
ivadomed/model-seg-dcm
Segmentation of lesions on MRI scans in patients with Degenerative Cervical Myelopathy (DCM)
ivadomed/model_sc_centerline
Repository for automated spinal cord centerline detection using deep learning
ivadomed/model_seg_csf_epi
Model repository for spinal cord csf segmentation on EPI data
ivadomed/model_seg_mouse-sc_wm-gm_t1
White and grey matter segmentation on T1-weighted exvivo mouse spinal cord
ivadomed/model_seg_ms_mp2rage
Model repository for MS lesion segmentation on MP2RAGE data from University of Basel
ivadomed/Bidsification
ivadomed/Counterfactual_synthesis_for_lesion_segmentation
ivadomed/data-testing
Light-weighted data for testing/tutorial
ivadomed/lumbar_seg_EPFL
Model repository for lumbar segmentation from EPFL data
ivadomed/microscopy-segmentation-monai
Axon and myelin segmentation of SEM images
ivadomed/model-seg-ms-axial-t2w
Deep-learning based segmentation of the spinal cord lesion project
ivadomed/model-canal-seg
ivadomed/model-gm-contrast-region-agnostic
ivadomed/anima-bin
pip version of https://anima.readthedocs.io
ivadomed/federated-learning
ivadomed/lumbar-T2star-GMseg
ivadomed/mice_uqueensland_gm
ivadomed/mice_uqueensland_sc
ivadomed/model_seg_exvivo_gm-wm_t2_unet2d-multichannel-softseg
Grey and white matters segmentation on exvivo T2 human data.
ivadomed/pybids
Python tools for querying and manipulating BIDS datasets.
ivadomed/t2star_sc