ivadomed/model-spinal-rootlets

Issues

• Add `orientation` key to `r20240915` release

  #79 opened 2 months ago by valosekj
  2

• Rootlet-informed regsitration to PAM50 template

  #78 opened 4 months ago by sandrinebedard
  7

• Obtain spinal levels from nerve rootlets segmentation

  #13 opened 4 months ago by tzebre
  17

• Update folder structure for `r20240523` model

  #77 opened 5 months ago by valosekj
  1

• Training model on 7T MP2RAGE images

  #65 opened 6 months ago by valosekj
  2

• nnUNetv2 problem with changing patch_size (hc-leipzig-7t-mp2rage)

  #70 opened 5 months ago by KaterinaKrejci231054
  4

• Merge `packaging_ventral_rootlets` and `packaging_lumbar_rootlets` folders

  #66 opened 6 months ago by valosekj
  0

• Error when running `packaging_lumbar_rootlets/run_inference_single_subject.py`

  #73 opened 5 months ago by valosekj
  8

• Lumbar rootlets - model training on `Draw Tube` labels

  #67 opened 6 months ago by valosekj
  12

• Multi-channel vs multi-label rootlets segmentation

  #71 opened 6 months ago by valosekj
  0

• Artifact in hc-leipzig-7t-mp2rage dataset in C2 level

  #69 opened 6 months ago by KaterinaKrejci231054
  2

• nnUNet renamed `checkpoint_latest.pth` to `checkpoint_final.pth `

  #68 opened 6 months ago by valosekj
  0

• Lumbar rootlets - first model training

  #48 opened 8 months ago by valosekj
  5

• Lumbar rootlets - images and labels have different resolution and dimensions

  #46 opened 6 months ago by valosekj
  6

• Collaborate with Philadelphia team to test model on pediatric data

  #19 opened 6 months ago by jcohenadad
  3

• Testing cervical model on `hc-leipzig-7t-mp2rage` dataset

  #63 opened 6 months ago by KaterinaKrejci231054
  8

• Try rootlets segmentation on inv2 (MP2RAGE)

  #45 opened 6 months ago by valosekj
  7

• Explore skeletonization filters (or similar approaches) to extract the centerline of nerve rootlets segmentation

  #59 opened 7 months ago by jcohenadad
  3

• Vertebral levels vs vertebral bodies

  #62 opened 7 months ago by valosekj
  0

• Try cervical dorsal model on whole spine image

  #57 opened 7 months ago by valosekj
  3

• Testing cervical model on 7T ME-GRE

  #61 opened 7 months ago by valosekj
  0

• Testing cervical model on `dcm-brno` dataset

  #60 opened 7 months ago by KaterinaKrejci231054
  1

• What is the best 3D Slicer filter to visualize rootlets

  #58 opened 7 months ago by jcohenadad
  0

• Update path to env with nnunet

  #54 opened 7 months ago by valosekj
  0

• Separete dorsal and ventral rootlets

  #52 opened 8 months ago by valosekj
  0

• Explore the Two-Phase Approach for the instance segmentation

  #51 opened 8 months ago by valosekj
  0

• Filename issues when running nnUNet inference

  #49 opened 8 months ago by valosekj
  0

• Ventral rootlets - results of fourth segmentation model

  #43 opened 9 months ago by LouisThomasLapointe
  1

• Ventral rootlets - summary

  #42 opened 9 months ago by valosekj
  0

• Extend the model for ventral rootlets

  #30 opened 9 months ago by valosekj
  4

• Ventral rootlets - results of third segmentation model

  #40 opened 9 months ago by LouisThomasLapointe
  1

• Ventral rootlets - results of second segmentation model

  #37 opened 9 months ago by LouisThomasLapointe
  2

• Ventral rootlets - results of first segmentation model

  #36 opened 9 months ago by LouisThomasLapointe
  3

• Push rootlets segmentations

  #33 opened 10 months ago by valosekj
  3

• Add a section about rootlets to spinalcordtoolbox.com

  #39 opened 10 months ago by valosekj
  0

• Manual rootlets labeling to assess inter-rater variability

  #17 opened a year ago by valosekj
  1

• Publish a release containing the latest model

  #32 opened a year ago by valosekj
  1

• Apply the model to whole `spine-generic multi-subject` dataset

  #31 opened a year ago by valosekj
  0

• Compare spinal level prediction with articles (Cadotte et al 2015)

  #10 opened a year ago by tzebre
  3

• Cadotte et al 2015 prediction problems

  #11 opened a year ago by tzebre
  2

• nnUNet model with 36 subjects (from ds004507 and spinegeneric)

  #8 opened a year ago by tzebre
  1

• Model test on different dataset

  #12 opened a year ago by tzebre
  0

• Evaluate rootlets segmentation stability on `spine-generic single-subject`

  #26 opened a year ago by valosekj
  1

• Try rootlets segmentation on `sci-paris`

  #27 opened a year ago by valosekj
  2

• Update nnUNet to v2.2

  #21 opened a year ago by valosekj
  0

• Add picture on the README

  #20 opened a year ago by jcohenadad
  1

• Reorganize repos

  #15 opened a year ago by jcohenadad
  0

• Change GIF anim on first page

  #14 opened a year ago by jcohenadad
  1

• Results nnUNet train all fold with 18 subject

  #7 opened a year ago by tzebre
  1

• How to use nnUNet (V2) a quick start guide

  #6 opened 2 years ago by tzebre
  2