j-coll

biodata

Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics

cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

opencga

An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Please contact support@zettagenomics.com for bug report and feature requests.

oskar

Oskar implements an analysis suite for working with genomic variation data. Some big data technologies such as Spark are used to provide big data analytics

j-coll/biodata

Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics

j-coll/bioinfo-libs

C library with bioinformatic data format parsers and BWT and SW aligners

j-coll/cell-maps

An open-source web-based HTML5 systems biology tool for visualizing and analysing biological networks

j-coll/cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

j-coll/common-libs

C library with common utilities

j-coll/datastore

Datastore library for querying RDBMS and NoSQL databases

j-coll/eva

European Variation Archive

j-coll/genome-maps

An open-source high-performance web-based HTML5 genome browser. Genome Maps can easily be customize and allow browsing user data such as BAM and VCF files among other formats.

j-coll/hadoop-release

j-coll/hbase-utils

Utilities to help HBase as a service in HDInsight Azure

j-coll/hpg-bigdata

This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster

j-coll/hpg-sysbio

HPG project for working in systems biology.

j-coll/hpg-variant

j-coll/java-common-libs

OpenCB common libs project

j-coll/jps_stat

Bash script to moniter current_heap_memory , max_heap_till_now , current_ram , max_ram_used , current_cpu_by_jvm details of all java programs running on current linux system

j-coll/jsorolla

JSorolla is a JavaScript Library for biological and genomic data visualization

j-coll/logs-test

j-coll/mongobee

MongoDB data migration tool for Java

j-coll/opencb.io

j-coll/opencga

Cloud-based environment for big data processing and analysis

j-coll/phoenix

Mirror of Apache Phoenix

j-coll/solr-operator

Kubernetes Operator for Apache Solr

j-coll/three.js

JavaScript 3D library.