j-coll

biodata

Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/

cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/

opencga

An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/

oskar

Oskar implements an analysis suite for working with genomic variation data. Some big data technologies such as Spark are used to provide big data analytics

j-coll/biodata

Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics

j-coll/bioinfo-libs

C library with bioinformatic data format parsers and BWT and SW aligners

j-coll/cell-maps

An open-source web-based HTML5 systems biology tool for visualizing and analysing biological networks

j-coll/cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

j-coll/common-libs

C library with common utilities

j-coll/datastore

Datastore library for querying RDBMS and NoSQL databases

j-coll/eva

European Variation Archive

j-coll/genome-maps

An open-source high-performance web-based HTML5 genome browser. Genome Maps can easily be customize and allow browsing user data such as BAM and VCF files among other formats.

j-coll/hadoop-release

j-coll/hbase-utils

Utilities to help HBase as a service in HDInsight Azure

j-coll/hpg-bigdata

This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster

j-coll/hpg-sysbio

HPG project for working in systems biology.

j-coll/hpg-variant

j-coll/java-common-libs

OpenCB common libs project

j-coll/jps_stat

Bash script to moniter current_heap_memory , max_heap_till_now , current_ram , max_ram_used , current_cpu_by_jvm details of all java programs running on current linux system

j-coll/jsorolla

JSorolla is a JavaScript Library for biological and genomic data visualization

j-coll/logs-test

j-coll/mongobee

MongoDB data migration tool for Java

j-coll/opencb.io

j-coll/opencga

Cloud-based environment for big data processing and analysis

j-coll/phoenix

Mirror of Apache Phoenix

j-coll/solr-operator

Kubernetes Operator for Apache Solr

j-coll/three.js

JavaScript 3D library.