j0kaso

j0kaso's Stars

• chiphuyen/python-is-cool

  Cool Python features for machine learning that I used to be too afraid to use. Will be updated as I have more time / learn more.

  Language:Jupyter Notebook3.5k1194557

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.2k156835724

• yangkky/Machine-learning-for-proteins

  Listing of papers about machine learning for proteins.

  1.5k148182200

• MDAnalysis/mdanalysis

  MDAnalysis is a Python library to analyze molecular dynamics simulations.

  Language:Python1.3k412.2k650

• nglviewer/ngl

  WebGL protein viewer

  Language:TypeScript66730802170

• molstar/molstar

  A comprehensive macromolecular library

  Language:TypeScript65626718148

• irods/irods

  Open Source Data Management Software

  Language:C++446436.1k141

• chemfiles/chemfiles

  Library for reading and writing chemistry files

  Language:C++1641218547

• getcontacts/getcontacts

  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation

  Language:Python9377241

• protwis/protwis

  Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

  Language:Python3445269

• bowman-lab/enspara

  Modeling molecular ensembles with scalable data structures and parallel computing

  Language:Python33104616

• gph82/mdciao

  mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data

  Language:Python30554

• philipwfowler/simple-membrane-protein-analysis

  This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.

  Language:Python235013

• GPCRviz/flareplot

  Visualization tool for changing networks

  Language:Python196139

• arose/simpletraj

  Simple library for reading trajectory coordinates

  Language:C17338

• czi-hca-comp-tools/projects

  a list of all projects

  Language:HTML95016

• nglviewer/nglviewer.github.io

  Language:HTML9613

• GPCRmd/MD-protocol

  System building protocol for GPCRmd molecular dynamics

  Language:Rich Text Format5203

• biocrawler/md-web-scrapers

  This is the home repository of team BioCrawCraw's contributions in Copenhagen BioHackathon 2020.

  Language:Java2320

• ljmesi/Copenhagen_BioHackathon2020

  This is the home repository of team BioCrawCraw's contributions in Copenhagen BioHackathon 2020.

  Language:Jupyter Notebook2400

• accre/bc_accre_jupyter

  Batch Connect Jupyter App adapted for the ACCRE Cluster

  Language:Shell1110

• hildilab/basekit

  Language:Python1201

• hildilab/ngl-proteinformatics

  Language:PHP1201

• jcvthibault/ibiomes

  iBIOMES (Integrated BIOMolEcular Simulations)

  Language:JavaScript1214

• jochym/abinitio-workshop

  Materiały do warsztatów obliczeń ab initio w IFJ PAN

  Language:Jupyter Notebook1501