Pinned Repositories
AI_Curriculum
Open Deep Learning and Reinforcement Learning lectures from top Universities like Stanford, MIT, UC Berkeley.
as_analysis
A pipeline for detecting allelic imbalance using DNA and RNA seq data
assocplots
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bamTobw
Convert BAM files to bigWig files with a simple command
BentCoinLottery
bioworkflows
In-house computational biology workflows at Columbia Neurology
co-expression-analysis
Dominant-eQTLs
lung_immune_fine_mapping
research websites
j3gu's Repositories
j3gu/AI_Curriculum
Open Deep Learning and Reinforcement Learning lectures from top Universities like Stanford, MIT, UC Berkeley.
j3gu/assocplots
j3gu/bioworkflows
In-house computational biology workflows at Columbia Neurology
j3gu/Dominant-eQTLs
j3gu/lung_immune_fine_mapping
research websites
j3gu/code_optimization_2020
j3gu/ComplexHeatmap
Make Complex Heatmaps
j3gu/ctwas
package for the causal TWAS project
j3gu/finemap-cancer
website for repo
j3gu/finemappeR
https://aselewa.github.io/finemappeR/
j3gu/finemapping-pipeline-1
Statistical fine-mapping pipeline in FinnGen
j3gu/finemapr
Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
j3gu/focus
FOCUS: Fine-mapping Of CaUsal gene Sets
j3gu/FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
j3gu/funcFinemapping
Website for the project
j3gu/heart_atlas
heart atlas analysis in R
j3gu/lab-wiki
Repository for documenting lab best practices
j3gu/m6A_in_disease_genetics
j3gu/mapgen
R package to perform gene mapping using functionally-informed genetic fine mapping
j3gu/mesc
Mediated Expression Score Regression (MESC)
j3gu/methylpy
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
j3gu/mixqtl
Total and allele specific read based cis-QTL, fine-mapping, and prediction
j3gu/MSscRNAseq2019
Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schafflick1, Xu, Hartlehnert1 et. al
j3gu/partition_heritability
Summer I rotation project
j3gu/personal-website
Code that'll help you kickstart a personal website that showcases your work as a software developer.
j3gu/pipelines
Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
j3gu/PRS_project
j3gu/python_convert
A collection of various utilities for GWAS summary statistics
j3gu/SCENT
Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
j3gu/sceptre
Robustly infer regulatory relationships in single-cell CRISPR screens.