jaeddy

jaeddy's Stars

• qiime2/provenance-lib

  QIIME 2 Provenance Replay Tools

  Language:Python34

• KarstensLab/microshades

  This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.

  Language:R4710

• NIH-NICHD/Elements-of-Style-Workflow-Creation-Maintenance

  Language:Jupyter Notebook319

• NIH-NCPI/NCPI_use_case_tracker

  This repo is for tracking NCPI interoperability use cases.

  31

• Ferlab-Ste-Justine/fhavro

  Fhir-Avro Converter

  Language:Java92

• linkml/linkml

  Linked Open Data Modeling Language

  Language:Python29791

• Sage-Bionetworks/awesome-synapse

  List of repositories here that utilizes the Synapse clients

  31

• cwendt94/espn-api

  ESPN Fantasy API! (Football, Basketball)

  Language:Python543183

• Sage-Bionetworks-IT/lambda-template

  Template for creating lambda repositories

  Language:Python34

• elixir-cloud-aai/cwl-WES

  Trigger CWL workflows via GA4GH WES and TES

  Language:Python1517

• soroushchehresa/awesome-coronavirus

  🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)

  Language:TypeScript1.6k348

• clayrisser/node-sphinxdoc

  document node project with sphinx

  Language:TypeScript3

• onceupon/Bash-Oneliner

  A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.

  8.2k551

• Relequestual/sensible-github-labels

  Github labels for teams that like workflows and structure

  Language:JavaScript12819

• olipratt/swagger-conformance

  Python based tool for testing whether your API conforms to its Swagger schema

  Language:Python5311

• Sage-Bionetworks/SynapseWorkflowHook

  Code for linking a workflow engine to a Synapse evaluation queue

  Language:Java41

• dreamtools/dreamtools

  Code sharing related to DREAM challenges

  Language:Python2311

• chapmanb/bcbb

  Incubator for useful bioinformatics code, primarily in Python and R

  Language:Python597244

• WillWeatherford/pytest-talk

  Code for lightning talk delivered at PuPPy meetup.

  Language:Python3

• Qix-/better-exceptions

  Pretty and useful exceptions in Python, automatically.

  Language:Python4.6k203

• Sage-Bionetworks/synapsePythonClient

  Programmatic interface to Synapse services for Python

  Language:Python6567

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3k935

• bheavner/minidtools

  A R package for working with BDDS minids

  Language:R1

• bcbio/bcbio-nextgen

  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

  Language:Python979356

• lwgray/pyEntrezId

  Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id

  Language:Python439

• thelovelab/tximport

  Transcript quantification import for modular pipelines

  Language:R13133

• JamieHeather/tcr-analysis

  Scripts and files that I use to analyse T cell receptor repertoire data, produced by deep-sequencing

  Language:Python68

• JohnCEarls/DataDirac

  Language:Python1

• JohnCEarls/AUREA

  AUREA: Adaptive Unified Relative Expression Analyser

  Language:Python11

• JohnCEarls/tcDirac

  Time course network analysis of transcriptomic data

  Language:Python2